Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 18,347,531 – 18,347,631 |
Length | 100 |
Max. P | 0.708406 |
Location | 18,347,531 – 18,347,631 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 82.00 |
Mean single sequence MFE | -26.93 |
Consensus MFE | -17.60 |
Energy contribution | -17.60 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.09 |
Mean z-score | -2.02 |
Structure conservation index | 0.65 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.708406 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18347531 100 - 20766785 UCAGCCAAUUCCUCGCCUGGCCAUUACAAUCUCGAGUGAUUCCCCUUGCUUGAGUGUGUUAUGAGCCAAAGCUAAGUAGGCUCCAUUUGAGAUUACCAGC ..((((.(((....((.(((((((.(((..((((((..(......)..))))))..))).))).))))..))..))).)))).................. ( -26.60) >DroSim_CAF1 31558 100 - 1 UCAGCCAAUUCCUCGCCUGGCCAUUACAAUCUCGAGUGAUUCCCCUUGCUUGAGUGGGUUAUGAGCCAAAGCUGAGUAGGCUCCAUUUGAGAUUACCAGA ..((((.((((...((.(((((((.((...((((((..(......)..))))))...)).))).))))..)).)))).)))).................. ( -29.40) >DroEre_CAF1 33367 84 - 1 UCAAC----------------CAUCACAAUCUCGAGUGAUUCCCCUAGCUUGAGUGUUCUUUGAGCCAAAGCUAAGUAGAGUCCAUUUGAGAUUACCAGA .....----------------......(((((((((((((((..(((((((..(.((((...))))).))))).))..)))).)))))))))))...... ( -24.80) >consensus UCAGCCAAUUCCUCGCCUGGCCAUUACAAUCUCGAGUGAUUCCCCUUGCUUGAGUGUGUUAUGAGCCAAAGCUAAGUAGGCUCCAUUUGAGAUUACCAGA ...........................(((((((((((..((..(((((((..((.........))..)))).)))..))...)))))))))))...... (-17.60 = -17.60 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:26 2006