Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,974,914 – 2,975,015 |
Length | 101 |
Max. P | 0.946585 |
Location | 2,974,914 – 2,975,015 |
---|---|
Length | 101 |
Sequences | 4 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 87.62 |
Mean single sequence MFE | -31.12 |
Consensus MFE | -24.59 |
Energy contribution | -26.65 |
Covariance contribution | 2.06 |
Combinations/Pair | 1.10 |
Mean z-score | -2.37 |
Structure conservation index | 0.79 |
SVM decision value | 1.36 |
SVM RNA-class probability | 0.946585 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2974914 101 + 20766785 AACAAUCAACAAAACCGAGCUGCUGGCAUCUGGCAACGCCCGCUAUAUGCAUAAAAGUGGGCAGCUCUGUUGGGGGGGUCAUUUAAAAAUGCGAGCUUCCA .....((((((.....((((((((.((....(((...))).((.....))......)).))))))))))))))((((((((((....))))...)))))). ( -33.00) >DroSec_CAF1 30864 101 + 1 AACAAUCAACAAAACCGAGCUGCUGGCAUGUGGCAACGCCCGCUAUAUACAUAAAAGUGGGCAGCUCUGUUGGGAGGGUCAUUUAAAAUUGCGAGCUUCCA ......(((((.....(((((((((((..(((....)))..))).....(((....))))))))))))))))(((((.((............)).))))). ( -33.70) >DroSim_CAF1 28824 101 + 1 AACAAUCAACAAAACCGAGCUGCUGGCAUCUGGCAACGCCCGCUAUAUACAUAAAAGUGGGCAGCUCUGUUGGGAGGGUCAUUUAAAAUUGCGAGCUUCCA ......(((((.....(((((((..(...)..))...(((((((...........)))))))))))))))))(((((.((............)).))))). ( -33.90) >DroYak_CAF1 16377 92 + 1 AACAAUCAACAAAAUCGAGCUGCUGGCAUCUGGCAACGCCCGCUAGAUAUUUAAAAGCAGGCACCUCUGUUGGGCGGGCCAUUUGAAAAUAU--------- ..............(((((.(((..(...)..)))..(((((((...........((((((....)))))).)))))))..)))))......--------- ( -23.90) >consensus AACAAUCAACAAAACCGAGCUGCUGGCAUCUGGCAACGCCCGCUAUAUACAUAAAAGUGGGCAGCUCUGUUGGGAGGGUCAUUUAAAAAUGCGAGCUUCCA ......(((((.....((((((((.(((((((((.......)))))))........)).)))))))))))))(((((.((............)).))))). (-24.59 = -26.65 + 2.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:04 2006