| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,341,899 – 18,342,008 |
| Length | 109 |
| Max. P | 0.509615 |
| Location | 18,341,899 – 18,342,008 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 71.82 |
| Mean single sequence MFE | -33.77 |
| Consensus MFE | -13.07 |
| Energy contribution | -13.47 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.39 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.509615 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18341899 109 - 20766785 U-------AGCUGGAGCUAUAGCUAGGUCUGGUACCUUUU-CUGUGAGGUAGUCUUCAGCAUCCCAGGGCUGUGAAACAGCCGUUCCAUAAUACAGGAACACACAGUUUCCGAUAAA .-------.(((((((((...((((....))))(((((..-....))))))).)))))))(((....(((((.....)))))(((((........)))))...........)))... ( -34.40) >DroSec_CAF1 26800 109 - 1 U-------ACAAGGAGAUAUAGCUAGCUCUGGUACCAUUA-CUGUGAGGUAAUCUUCAGCAUCCCAGGGUUGUGAAACAGCCGUUCCAUAAAACAGGAACACACAGUUUCCGAUAAA .-------....(((((....((((....)))).......-(((((.....................(((((.....)))))(((((........))))).))))))))))...... ( -26.70) >DroSim_CAF1 25666 109 - 1 U-------AGCUGGAGAUAUAGCUAGCUCUGGUACCUUUA-CUGUGAGGUAAUCUUCAGCAUCCCAGGGUUGUGAAACAGCCGUUCCAUAAAACAGGAACACACAGUUUCCGACAAA .-------.(((((((((...((((....))))(((((..-....))))).)))))))))........((((.(((((....(((((........))))).....)))))))))... ( -34.50) >DroEre_CAF1 25107 109 - 1 A-------AGCUGGAGUUAUAUUAUGUUCUGGUUCCUUAA-CUGCGAGGUAGUCUUCAGCAUCCCAUGGCUGGGAAACAGCCGUUCCAAAACACAAGAACACGCAGUUUCCGAUGAA (-------((((((.(((...((.((((.(((........-.(((((((....)))).)))....(((((((.....))))))).))).)))).)).))).).))))))........ ( -28.00) >DroAna_CAF1 24286 109 - 1 G-------AGAUGGCUUUAUGGCUAGUUCCGGUUGUGGGG-AUUGCAGGAAGUCCUCCGCGUCCCAGGGCUGGGAAACAGCGGAGCCUAAAAUCAAAUAGACGGAAUUGCCGAUAAA .-------........(((((((.(((((((.((((...(-(((..(((.....((((((.(((((....)))))....)))))))))..))))..)))).)))))))))).)))). ( -41.80) >DroPer_CAF1 24629 115 - 1 UUGCCUUCGGCUUGCGC-UCGGCCAGCUCUGGUUCGUGGGGCUGU-AAAAAGUCUUCGGCAUCCCAGGGUUGGGAUACAGCCGUCCCAAAGGCCAAAAAUAUGCAAUUCCCCACAAA ((((....(((....))-).((((((((((((.(((.((((((..-....)))))))))....))))))))(((((......)))))...))))........))))........... ( -37.20) >consensus U_______AGCUGGAGAUAUAGCUAGCUCUGGUACCUUUA_CUGUGAGGUAGUCUUCAGCAUCCCAGGGCUGGGAAACAGCCGUUCCAAAAAACAAGAACACACAGUUUCCGAUAAA ............(((((........(((..((((((((.......))))))..))..))).......(((((.....)))))))))).............................. (-13.07 = -13.47 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:24 2006