| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,341,357 – 18,341,462 |
| Length | 105 |
| Max. P | 0.586520 |
| Location | 18,341,357 – 18,341,462 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 80.89 |
| Mean single sequence MFE | -34.25 |
| Consensus MFE | -21.19 |
| Energy contribution | -21.25 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.586520 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18341357 105 - 20766785 GACAUAAUCCACAUGGCCAGAAAUGGUAACGCCGAAAAGAAUGCAUUGCUUUUCAUGUCCAUGUCCAGAACCCCGUUCAUAUACGUUGGGAUCUGGGCCUGGAGG ........((.(((.((((....))))......((((((.........)))))))))((((.(((((((.((((((......)))..))).))))))).)))))) ( -34.80) >DroVir_CAF1 28661 105 - 1 GACAUAAUCCACAUGGCCAUGAAGGGCAGAGCAGAGAAUAGCGCAUUGUCCUUAAUAUCCAUUUGCAGCACUCCAUUCAUAUAGGCCGGAAUCUCAGCCUGCAGC .........((.((((.....((((((((.((..........)).)))))))).....)))).))................(((((.((....)).))))).... ( -21.90) >DroPse_CAF1 27723 105 - 1 GACAUGCACCACAUGGCCAGGAAGGGCAGGGCCGAAAAGAAGGCAUUGCUCUUGAUGUCCAUGUCGAGGACACCAUUCAUAUAGGAUGGGAUCUCGGCCUGGAGU ..((.((...((((((.((..((((((((.(((........))).))))))))..)).))))))(((((.(.((((((.....))))))).))))))).)).... ( -43.10) >DroEre_CAF1 24554 105 - 1 GACAUAAUCCACAUGGCCAAAAAUGGUAACGCCGAAAAGAAUGCAUUGCUUUUCAUGUCCAUGCCCAGAACGCCGUUCAUAUAGGUUGGGAUCUGAGCCUGCAGG (((((..........((((....))))......((((((.........)))))))))))((.((.((((.(.(((..(.....)..)))).)))).)).)).... ( -22.10) >DroAna_CAF1 23742 105 - 1 GACAUGCACCACAUGGCCAGGAAGGGCAGAGCCGAGAAAAAGGUGUUGCUCUUCAUGUCCAUGUCGAGGACUCCGUUCAUGUAGGAGGGAAUUUCCGCCUGCAGG ....(((.(.((((((.((.(((((((((.(((........))).))))))))).)).)))))).)(((.((((.........))))((.....)).)))))).. ( -40.50) >DroPer_CAF1 24079 105 - 1 GACAUGCACCACAUGGCCAGGAAGGGCAGGGCCGAAAAGAAGGCAUUGCUCUUGAUGUCCAUGUCGAGGACACCAUUCAUAUAGGAUGGGAUCUCGGCCUGGAGU ..((.((...((((((.((..((((((((.(((........))).))))))))..)).))))))(((((.(.((((((.....))))))).))))))).)).... ( -43.10) >consensus GACAUAAACCACAUGGCCAGGAAGGGCAGAGCCGAAAAGAAGGCAUUGCUCUUCAUGUCCAUGUCCAGGACACCAUUCAUAUAGGAUGGGAUCUCGGCCUGCAGG ..........((((((.((..((((((((.((..........)).))))))))..)).)))))).((((...(((.((.....)).)))..)))).......... (-21.19 = -21.25 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:23 2006