| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,337,169 – 18,337,265 |
| Length | 96 |
| Max. P | 0.938822 |
| Location | 18,337,169 – 18,337,265 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 70.03 |
| Mean single sequence MFE | -31.17 |
| Consensus MFE | -11.49 |
| Energy contribution | -13.48 |
| Covariance contribution | 1.98 |
| Combinations/Pair | 1.42 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.37 |
| SVM decision value | 1.30 |
| SVM RNA-class probability | 0.938822 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18337169 96 + 20766785 AAGCUGACGGCGGG------UUCGAUUAGCUCUUCAACGAAAU----------GGGAGGUGUUAACCGAGCUGGCUGCAGGUUAGGAGUUGAGUUUAGUUUUGAUCUCUAGC ...(((.((((.((------((((.(((((.((((........----------..)))).))))).)))))).)))))))(((((..((..((......))..))..))))) ( -35.90) >DroPse_CAF1 23587 93 + 1 CAC-----------------UACGAUUAGUCC--CACUAAAAACAGAGUACGCAGAAGGUGUAAAGUAAGCUGACAGUCGGUUCCAAAUUGAGUUGCUUCUCGAUCCUGGAC ...-----------------..(((((.(((.--..............(((((.....))))).((....))))))))))..((((.((((((......))))))..)))). ( -19.80) >DroSec_CAF1 21809 96 + 1 GAACUGACGGCGGG------UUCGAUUAGCUCACCAAUGAAAU----------GGGAGGUGUUAACCGAGCUGGCUGCAGGUUAGGAAUUGAGUUUAAUUUCGAUCUCUAGC ...(((.((((.((------((((.(((((.(.(((......)----------))...).))))).)))))).)))))))(((((..((((((......))))))..))))) ( -37.90) >DroSim_CAF1 20943 96 + 1 AAACUGACGGCGGG------UUCGAUUAGCUCUCCAAUGAAAU----------GGGAGGUGUUAACCGAGCUGGCUGCAGGUUAGGAGUUGAGUUUAAUUUCGAUCUCUAGC ...(((.((((.((------((((.((((((((((........----------.))))).))))).)))))).)))))))(((((..((((((......))))))..))))) ( -40.70) >DroEre_CAF1 20767 92 + 1 G---UGACGGCG-G------UUCGAUUAGCUCUUCAAUAAAAU----------CGGAGGUGUUAAGCGAGCUGGCUGCAGGUUAGGAGUUGAGUUUCAUUUCGAUCUCUAGC .---((.(((((-(------((((.(((((.((((........----------..)))).))))).)))))).)))))).(((((..((((((......))))))..))))) ( -31.60) >DroAna_CAF1 19994 101 + 1 AACCCGACGUCUGGUCAUGAUUUGAUUAGCUCUCUGCUG-AAU----------GGAAGGUGUAAAGCGAAGUGGCUGCGAUUUAAGAGUUGAGUUUGGUUGAGAUCUCGAAC ....(((.(.(((((((.....))))))))((((.((..-(((----------...........(((......))).(((((....))))).)))..)).))))..)))... ( -21.10) >consensus AAACUGACGGCGGG______UUCGAUUAGCUCUCCAAUGAAAU__________GGGAGGUGUUAACCGAGCUGGCUGCAGGUUAGGAGUUGAGUUUAAUUUCGAUCUCUAGC ....((.((((.((......((((.((((((((((...................))))).))))).)))))).)))))).(((((..((((((......))))))..))))) (-11.49 = -13.48 + 1.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:22 2006