Locus 5786

Sequence ID 2R_DroMel_CAF1
Location 18,332,174 – 18,332,271
Length 97
Max. P 0.582563
window9267

overview

Window 7

Location 18,332,174 – 18,332,271
Length 97
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 83.15
Mean single sequence MFE -22.03
Consensus MFE -16.79
Energy contribution -16.60
Covariance contribution -0.19
Combinations/Pair 1.29
Mean z-score -1.56
Structure conservation index 0.76
SVM decision value 0.10
SVM RNA-class probability 0.582563
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18332174 97 + 20766785
--------AAAUAAUGAACGG-AGUUUGAUUUAAAAUUCAAUACCC-----AAACACACGCAGCUGGGCCACUCGGCCGAGUUUUACCUGGACAAGGAGAAGGCGAAAAAC
--------...........((-.((((((........)))).))))-----.......(((((((.((((....)))).))))...(((.....))).....)))...... ( -24.30)
>DroSim_CAF1 16093 97 + 1
--------AAAUAAUGAACGG-AGUUUGAUUUAAAAUUCAAUAACC-----AAACACACGCAGCUGGGCCACUCGGCCGAGUUUUACCUGGACAAGGACAAGGCGAAAAAC
--------...........((-...((((........))))...))-----.......(((((((.((((....)))).))))...(((.....))).....)))...... ( -23.50)
>DroEre_CAF1 15744 102 + 1
--------AAAUAAUGAACGG-AGUUUGAUUUAAAAUUCAAUAACCAAACCAAACACACGCAGCUGGGCCACUCGGCCGAGUUUUACCUGGACAAGGACAAGGCGAAAAAC
--------...........((-...((((........))))...))............(((((((.((((....)))).))))...(((.....))).....)))...... ( -23.50)
>DroWil_CAF1 19512 106 + 1
UGUAGGGGAAUUAGUUACUAAAACUUGCAUUUAAAAUUCAAUAAUA-----AAUUACACGCAGCUGGGUCAUACGGCCGAGUUUUAUUUGGAUAUGGACAAAUCGAAAGAU
((((((....((((...))))..))))))......((((((..(((-----((.........(((.((((....)))).))))))))))))))........(((....))) ( -18.10)
>DroYak_CAF1 17189 97 + 1
--------AAAUAAUGAACGG-AGUUUGAUUUAAAAUUCAAUAACC-----AAACACACGCAGCUGGGCCACUCGGCCGAGUUUUACCUGGACAAGGACAAGGCGAAAAAC
--------...........((-...((((........))))...))-----.......(((((((.((((....)))).))))...(((.....))).....)))...... ( -23.50)
>DroAna_CAF1 15119 90 + 1
--------AAAUAAC---CCG-A----CAUUUAAAAUUCAAUAACC-----AAACACACGCAGCUGGGCCACUCGGCCGAGUUCUACCUGGACAGGGACAAGGCGAAAAAC
--------.......---...-.----...................-----.......(((((((.((((....)))).))))...(((....)))......)))...... ( -19.30)
>consensus
________AAAUAAUGAACGG_AGUUUGAUUUAAAAUUCAAUAACC_____AAACACACGCAGCUGGGCCACUCGGCCGAGUUUUACCUGGACAAGGACAAGGCGAAAAAC
..........................................................(((((((.((((....)))).))))...(((.....))).....)))...... (-16.79 = -16.60 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:21 2006