Locus 5784

Sequence ID	2R_DroMel_CAF1
Location	18,330,048 – 18,330,141
Length	93
Max. P	0.988806

overview

Window 5

Location	18,330,048 – 18,330,141
Length	93
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	92.47
Mean single sequence MFE	-21.36
Consensus MFE	-18.00
Energy contribution	-18.04
Covariance contribution	0.04
Combinations/Pair	1.05
Mean z-score	-2.12
Structure conservation index	0.84
SVM decision value	2.14
SVM RNA-class probability	0.988806
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18330048 93 - 20766785
UUCCCAUUCGGAUCCACCAACAACUGGAUGCCUCUGACAGUUGAGAACCGACUCUGCACCCGACUCAACCUCAGAGUCUCCGUCCGAUUAUCC
.......((((((...(((.....)))....((((((..((((((...((..........)).)))))).)))))).....))))))...... ( -22.80)
>DroSec_CAF1 13692 93 - 1
UUCCCAUUCGGAUCCACCAACAACUGGAUGCCUCUGACAGUUGAGAACCGACUCCGCACCCGACUCAACCUCAGAGUCUCCGUCCGAUUCUCC
.......((((((...(((.....)))....((((((..((((((...((..........)).)))))).)))))).....))))))...... ( -22.80)
>DroSim_CAF1 13962 93 - 1
UUCCCAUUCGGAUCCACCAACAACUGGAUGCCUCUGACAGUUGAGAACCGACUCCGCACCCGACUCAACCUCAGAGUCUCCGUCCGAUUCUCC
.......((((((...(((.....)))....((((((..((((((...((..........)).)))))).)))))).....))))))...... ( -22.80)
>DroEre_CAF1 13661 93 - 1
UUCCCAUUCGGAUCCACCAACAACUGGAUGCCUCUGACAGUUGAGAACCGACUCCGCACCCGACUCAACCUCAGAGUCUCCGUACGAUUCUCC
........((((((((........))))...((((((..((((((...((..........)).)))))).))))))..))))........... ( -20.60)
>DroYak_CAF1 15109 81 - 1
UCCCCAUUCGGAUCCACCAACAACUGGAUGCCACUGACAGUUGAGAACCGACUCCGCACCCGACUCGACCUCAGAGUCU------------CC
.........(((((((........))))).)).......((.(((......))).))....(((((.......))))).------------.. ( -17.80)
>consensus
UUCCCAUUCGGAUCCACCAACAACUGGAUGCCUCUGACAGUUGAGAACCGACUCCGCACCCGACUCAACCUCAGAGUCUCCGUCCGAUUCUCC
.........(.(((((........))))).)((((((..((((((...((..........)).)))))).))))))................. (-18.00 = -18.04 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:19 2006