Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 18,324,176 – 18,324,267 |
Length | 91 |
Max. P | 0.500000 |
Location | 18,324,176 – 18,324,267 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 65.26 |
Mean single sequence MFE | -26.73 |
Consensus MFE | -13.10 |
Energy contribution | -15.47 |
Covariance contribution | 2.37 |
Combinations/Pair | 1.30 |
Mean z-score | -1.31 |
Structure conservation index | 0.49 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18324176 91 - 20766785 AACUGUUCGCAUAAGAGGCACUGCACUUGGGUGCACUGAACUCGACAGGAUGAGUCCAGAAGGAUAUGUCUUCACCCUGCUGUGGGCCAAA ....(((((((...(((.((.(((((....))))).))..)))(.((((.((((..((........))..)))).)))))))))))).... ( -27.60) >DroSec_CAF1 7925 74 - 1 -----------------GCACUGCACUUGGGUACACUGAACUCGACAGGAUGCGUCCCGAAGGAUGUGUCUUGACCCUGCUGUGGGCCAAA -----------------((.(..((...((((....((....)).((((((((((((....))))))))))))))))...))..))).... ( -27.60) >DroSim_CAF1 7899 74 - 1 -----------------GCACUGCACUUGGGUACACUGAACUCGACAGGAUGCGUCCCGAAGGAUGUGUCUUGACCCUGCUGUGGGCCAAA -----------------((.(..((...((((....((....)).((((((((((((....))))))))))))))))...))..))).... ( -27.60) >DroEre_CAF1 7743 84 - 1 AACUGUUGGCAUAAGCGCCACUGCACUUGGGUGCACUGAACUCCACAGGAUGUGUACGGAAGGAUGUGGGUUGACCGCGUUGUG------- ..((((..((((..(((((.(.......)))))).(((.......))).))))..)))).(.(((((((.....))))))).).------- ( -25.00) >DroYak_CAF1 7837 75 - 1 ----------------GCCACUGCACUUGGGUGCACUGAACUGCAAAGGAUGUGUCCCGAAGGAUAUGUCUUGACCCUGCUGUGGGCCAUG ----------------.((((.(((...(((((((......)))..(((((((((((....))))))))))).))))))).))))...... ( -28.90) >DroPer_CAF1 7499 69 - 1 AGCUGUC-----AAGGGGGGGU---GUCGGGUGCAUUGAACUUGACAGA-------------GACGUG-CAUGACCCUGCCACUGGUCAGU .((((((-----(..((.(((.---(((..((((((....(((....))-------------)..)))-))))))))).))..))).)))) ( -23.70) >consensus ________________GGCACUGCACUUGGGUGCACUGAACUCGACAGGAUGCGUCCCGAAGGAUGUGUCUUGACCCUGCUGUGGGCCAAA ..................(((.((..((((((.......))))))((((((((((((....)))))))))))).....)).)))....... (-13.10 = -15.47 + 2.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:18 2006