Locus 5782

Sequence ID 2R_DroMel_CAF1
Location 18,323,240 – 18,323,344
Length 104
Max. P 0.696464
window9263

overview

Window 3

Location 18,323,240 – 18,323,344
Length 104
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 84.34
Mean single sequence MFE -32.42
Consensus MFE -26.09
Energy contribution -26.23
Covariance contribution 0.14
Combinations/Pair 1.14
Mean z-score -1.87
Structure conservation index 0.80
SVM decision value 0.34
SVM RNA-class probability 0.696464
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18323240 104 - 20766785
AUCGGCUUUUGCUACUCAGUUCGUCUGCGGAGACGUGAAUGGGUUGGGUGAAUUCGAUGUUUUCGGCGGAGAUAUCUGUACAAA----GAAAAAAAGGGUUAU---UA--UCG
...(((....)))((((((..(((..(((....)))..)))..)))))).(((((....(((((.(((((....))))).....----)))))...)))))..---..--... ( -31.30)
>DroSec_CAF1 6941 107 - 1
AUCGGCUUUUGCUACUCAGUUCGUCUGCGGAGACGUGAAUGGGUUGGGUGAAUUCGAUGUUUUCGGCGGAGAUAUCUGUGCAAC----AAGAAAAAGGGUUAA--AUGGCGCA
((((((....))(((((((..(((..(((....)))..)))..)))))))....)))).(((((.(((.((....)).)))...----..))))).(.(((..--..))).). ( -32.70)
>DroSim_CAF1 6929 107 - 1
AUCGGCUUUUGCUACUCAGUUCGUCUGCGGAGACGUGAAUGGGUUGGGUGAAUUCGAUGUUUUCGGCGGAGAUAUCUGUGCAAC----AAGAAAAAGGGUUAA--AUGGCGCA
((((((....))(((((((..(((..(((....)))..)))..)))))))....)))).(((((.(((.((....)).)))...----..))))).(.(((..--..))).). ( -32.70)
>DroEre_CAF1 6943 111 - 1
AUCGGCUGUUGCUACUCAGUUCGUCUGCGGAGACGUGAAUGGGUUGGUUGAAUUCGAUGUUUUCGGCGGAGAUAUCUGUGCAAUGGAAACGGAAAAUGGUUAA--AUAGCUGG
..((((((((...((((((..(((..(((....)))..)))..)))((((....))))((((((.(((.((....)).)))..((....)))))))))))..)--))))))). ( -37.30)
>DroYak_CAF1 6996 107 - 1
AUCGGCUUUUGCUACUCAGUUCGUCUGCGGAGACGUGAAUGGGUUGUGUGAAUUCGAUGUUUUCAGCGGAGAUAUCUGUGAAGU----ACGCAAAAUGGUUAA--GUAACUCA
.(..(((((((((((.(((..(((..(((....)))..)))..))).)))........(((((((.((((....))))))))).----)))))))..)))..)--........ ( -29.70)
>DroAna_CAF1 6704 108 - 1
AUUGGCUGUUGCUGUUCAGUUCGUCUGCGGAGACGUGAAUGGGUUGGGUGAAUUCGAUGUAUUCGGAGGAUAUAUCUGGAAAAU----AGGACAUAUGU-UAUUAAGACAGUA
....((((((.((((((((..(((..(((....)))..)))..)))......(((((((((((.....)))))))).))).)))----))(((....))-).....)))))). ( -30.80)
>consensus
AUCGGCUUUUGCUACUCAGUUCGUCUGCGGAGACGUGAAUGGGUUGGGUGAAUUCGAUGUUUUCGGCGGAGAUAUCUGUGCAAU____AAGAAAAAGGGUUAA__AUAGCGCA
...(((((((..(((((((..(((..(((....)))..)))..))))))).....((((((((.....))))))))..................)))))))............ (-26.09 = -26.23 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:17 2006