Locus 5777

Sequence ID 2R_DroMel_CAF1
Location 18,308,013 – 18,308,114
Length 101
Max. P 0.835897
window9254

overview

Window 4

Location 18,308,013 – 18,308,114
Length 101
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 80.64
Mean single sequence MFE -32.34
Consensus MFE -22.01
Energy contribution -25.54
Covariance contribution 3.53
Combinations/Pair 1.05
Mean z-score -1.96
Structure conservation index 0.68
SVM decision value 0.73
SVM RNA-class probability 0.835897
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18308013 101 + 20766785
CGGUCGUGGUCAGCGUGAGCUGAUCAUUGGCGAUCGUCAGACUGGGUAAGAUUCUGGAGAUAACCA----AA-CCAUGACACACCAUUUCUCAAUUGCUAGC---AAGC
..((((((((((((....)))))...((((..(((..((((((.....))..))))..)))..)))----).-)))))))..............(((....)---)).. ( -33.40)
>DroSec_CAF1 1241 101 + 1
CGGUCGUGGUCAGCGUGAGCUGAUCAUUGGCGAUCGUCAGACUGGGUAAGAUUCUAGAGAUAACCA----AA-CCAGGAAACACCAUUUCUCAAUUGCUAGC---AAGC
((((((((((((((....)))))))))((((....)))))))))(((((......((((((..((.----..-...)).......))))))...)))))...---.... ( -29.80)
>DroSim_CAF1 1231 101 + 1
CGGUCGUGGUCAGCGUGAGCUGAUCAUUGGCGAUCGUCAGACUGGGUAAGGUUCUAGAGAUAACCA----AA-UCAGGACACACCAUUUCUCAAUUGCUAGC---AAGC
((((((((((((((....)))))))))((((....)))))))))(((...(((((.((........----..-)))))))..))).........(((....)---)).. ( -33.70)
>DroEre_CAF1 1239 104 + 1
CGGUCGUGGACAGCGUGAGCUGAUCAUUGGCGAUCGUCAGACUGGGUAAGAUUUUAGAGAUGCCCA----AA-CAACAUUAAAACAUUUCUCAGUUCCCAGUAACAAGC
(((((((.((((((....)))).))....)))))))....((((((...((((..(((((((....----..-...........))))))).))))))))))....... ( -31.43)
>DroYak_CAF1 1229 101 + 1
CGGUCGUGGUCAGCGUGAGCUGAUCAUUGGCGAUCGUCAGACUGGGUAAGAUUCUAUAGAUUCCCA----AA-CAGUAAUACACCAUUUCUCGAUACCUUUU---AAGC
((((((((((((((....)))))))))((((....)))))))))((((.((.((....)).))...----..-..(.....)............))))....---.... ( -28.50)
>DroAna_CAF1 1216 100 + 1
CGGUCGUGGCCAGCGUGAGCUGAUCAUUGGCGAUCGUCAGACCGGGUAAGAU----GAGUGGCCCACUAAAAUCCGUGCCACUUUUCUCCUCAAUAUCUCUU---UU--
((((((((..((((....))))..)))((((....)))))))))((..(((.----(((((((..((........))))))))).)))))............---..-- ( -37.20)
>consensus
CGGUCGUGGUCAGCGUGAGCUGAUCAUUGGCGAUCGUCAGACUGGGUAAGAUUCUAGAGAUAACCA____AA_CCAUGACACACCAUUUCUCAAUUGCUAGC___AAGC
((((((((((((((....)))))))))((((....)))))))))............((((............................))))................. (-22.01 = -25.54 +   3.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:08 2006