| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,307,441 – 18,307,533 |
| Length | 92 |
| Max. P | 0.692310 |
| Location | 18,307,441 – 18,307,533 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 70.32 |
| Mean single sequence MFE | -26.08 |
| Consensus MFE | -19.46 |
| Energy contribution | -18.85 |
| Covariance contribution | -0.61 |
| Combinations/Pair | 1.50 |
| Mean z-score | -0.69 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.692310 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18307441 92 - 20766785 ACAUGGAGCUUGCGGGCAGCAAGACUGGCGGCGGGAUAAGCGGCUUUGCAGGCGACCUGUAAGAGAGUAGGUUAAUCGAUAUGAUUAUGCGA-------------- ........((((((((..((..(...(((.((.......)).)))...)..))..))))))))...(((...(((((.....))))))))..-------------- ( -26.20) >DroVir_CAF1 764 93 - 1 ACAUGGAGUUUACGGGCAGCAAGACUGGUAGCUGGAUAUGCAGCUUUGCAGGCAACCUGUGGACGAAUUC--CAAUUGUG-----C--CCAA---CAUUAGCUCU- ....((((((...(((((.(((...(((..((((......))))((..((((...))))..))......)--)).)))))-----)--))..---....))))))- ( -29.60) >DroPse_CAF1 1134 101 - 1 ACAUGGAACUUACGGGCAGCGAGAGUGGAAGCUGGGUACGCAACCUUGCAGGCAAUCUGGAAGAGAAUAG--CAAUCGAAUCGAGUU-CCGGAAUUACUAAC--AA ...((((((((.(.(((.((....))....))).)....((..((((.(((.....))).))).)....)--).........)))))-)))...........--.. ( -22.30) >DroEre_CAF1 667 92 - 1 ACAUGGAACUUGCGGGCAGCAAGACUGGCGGCGGGAUAGGCGGCUUUGCAGGCGACCUGCAAGAGAGUAGGUUAAUCGAUAUGAUUAUGCGA-------------- ........((((((((..((..(...(((.((.......)).)))...)..))..))))))))...(((...(((((.....))))))))..-------------- ( -27.90) >DroYak_CAF1 658 91 - 1 ACAUGGAACUUGCGGGCAGCAAGACUGGCGGCGGGAUAGGCGGCUUUGCAGGCGACCUGCAAGAGAGUAGGUUA-UUGAUAUGAUUAUGCGA-------------- ........((((((((..((..(...(((.((.......)).)))...)..))..))))))))...((((((((-(....)))))).)))..-------------- ( -28.20) >DroPer_CAF1 718 101 - 1 ACAUGGAACUUACGGGCAGCGAGAGUGGAAGCUGGGUACGCAACCUUGCAGGCAAUCUGGAAGAGAAUAG--CAAUCGAAUCGAGUU-CCGGAAUUACUAAC--AA ...((((((((.(.(((.((....))....))).)....((..((((.(((.....))).))).)....)--).........)))))-)))...........--.. ( -22.30) >consensus ACAUGGAACUUACGGGCAGCAAGACUGGCAGCGGGAUACGCAGCUUUGCAGGCAACCUGCAAGAGAAUAG__CAAUCGAUAUGAUUA_CCGA______________ ........((((((((..((..(...(((.((.......)).)))...)..))..))))))))........................................... (-19.46 = -18.85 + -0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:08 2006