Locus 5775

Sequence ID 2R_DroMel_CAF1
Location 18,305,628 – 18,305,725
Length 97
Max. P 0.930595
window9252

overview

Window 2

Location 18,305,628 – 18,305,725
Length 97
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 94.86
Mean single sequence MFE -28.40
Consensus MFE -22.28
Energy contribution -22.32
Covariance contribution 0.04
Combinations/Pair 1.04
Mean z-score -2.37
Structure conservation index 0.78
SVM decision value 1.21
SVM RNA-class probability 0.930595
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18305628 97 - 20766785
UGAGGAUAAACCCACUGGAUUUUCACCACCUCUCCCCCGAAAGAGUCCAGAAAGCUGCCUUCUGCGGGGCCAGA-AAAGUCUUGAAAUUUCUGGCCAC
...((......)).(((((((((..................)))))))))....((((.....))))(((((((-((..(....)..))))))))).. ( -27.57)
>DroSec_CAF1 102768 97 - 1
UGAGGAUAAACCCACUGGAUUUUCACCACCUCUCCUCCGAAAAAGUCCAGAAAGCUGCCUUCUGCGGGGCCAGA-AAAGUCUUGAAAUUUCUGGCCAC
...((......)).(((((((((..................)))))))))....((((.....))))(((((((-((..(....)..))))))))).. ( -27.47)
>DroSim_CAF1 103982 97 - 1
UGAGGAUAAACCUACUGGAUUUUCACCACCUCCCCUCCGAAAAAGUCCAGAAAGCUGCCUUCUGCGGGGCCAGA-AAAGUCUUGAAAUUUCUGGCCAC
..(((.....))).(((((((((..................)))))))))....((((.....))))(((((((-((..(....)..))))))))).. ( -27.67)
>DroEre_CAF1 106722 95 - 1
UGAGGAUAAAACCACUGGAUUUUCACCAUCUCUCCCCCGAA--AGUCCAGAAAGCUGCCUUCUG-GGGGCCAGAAAAAAUCUUGAAAUUUCUGGCCAC
...((......)).((((((((((..............)))--))))))).......((....)-).(((((((((...........))))))))).. ( -28.24)
>DroYak_CAF1 104572 95 - 1
UGAGGAUAAAACCACUGGAUUUUCACCACCUCUCCCCCGAA--AGUCCAGAAAGCUGCCUUCUGCGGGGCCAGA-AAAGUCUUGAAAUUUCUGGCCAC
...((......)).((((((((((..............)))--)))))))....((((.....))))(((((((-((..(....)..))))))))).. ( -31.04)
>consensus
UGAGGAUAAACCCACUGGAUUUUCACCACCUCUCCCCCGAAA_AGUCCAGAAAGCUGCCUUCUGCGGGGCCAGA_AAAGUCUUGAAAUUUCUGGCCAC
...((......)).((((((((((..............)))..)))))))....((((.....))))(((((((...............))))))).. (-22.28 = -22.32 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:07 2006