Locus 5774

Sequence ID 2R_DroMel_CAF1
Location 18,302,267 – 18,302,363
Length 96
Max. P 0.938202
window9251

overview

Window 1

Location 18,302,267 – 18,302,363
Length 96
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 88.99
Mean single sequence MFE -21.38
Consensus MFE -17.54
Energy contribution -18.82
Covariance contribution 1.28
Combinations/Pair 1.10
Mean z-score -1.94
Structure conservation index 0.82
SVM decision value 1.29
SVM RNA-class probability 0.938202
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18302267 96 - 20766785
AAUUUGAUUGGGUUGCGAAAAAUGGAAACAGUUAAUUAUGGCACUUUAGAACACCUGAACUAAAAUGCUUUCGAAUUGAUUUUUGUCAACUUUUUU
.....((..((((((((((((.((....)).((((((..((((.(((((..(....)..))))).))))....)))))))))))).))))))..)) ( -20.20)
>DroSec_CAF1 99440 95 - 1
AAUUUGAUUGGGUUGCGAAAAAUGGGAACAAUUAAUUAUGGCACUUUAGAACACCUGAACUAAAGUGCUUUCGAAUUGAUUUUUGUCAACUUUUU-
.........((((((((((((.((....)).((((((..((((((((((..(....)..))))))))))....)))))))))))).))))))...- ( -24.40)
>DroSim_CAF1 100598 91 - 1
AAUUUGAUUGGGUUGCGAAAAAUGGGAACAA----UUAUGGCACUUUAGAACACCUGAACUAAAGUGCUUUCGAAUUGAUUUUUGCCAACUUUUU-
.........((((((((((((..(....)((----((..((((((((((..(....)..))))))))))....))))..)))))).))))))...- ( -21.20)
>DroEre_CAF1 103244 94 - 1
AAUUUGAUCGGGUUACAAA-ACUGGAAGCAAUUAAUUAUGGCACUUUAGAGCACCUGCACUAAAGUGCUUUCAAAUUGAUUUUUGUCAACUUUUU-
(((((((((.((((....)-))).)).............((((((((((.((....)).)))))))))).)))))))(((....)))........- ( -25.10)
>DroYak_CAF1 101156 94 - 1
AAUUUGACUGCGUUACAAAAAGUGGAAACAAUUAAUUAUGGCACUUUCGAACACCUGAACUAAAGUGCUUUCGAAUUGAUUUUAGUGAACUUUU--
.................(((((((....)((((((((..((((((((.(..(....)..).))))))))....)))))))).......))))))-- ( -16.00)
>consensus
AAUUUGAUUGGGUUGCGAAAAAUGGAAACAAUUAAUUAUGGCACUUUAGAACACCUGAACUAAAGUGCUUUCGAAUUGAUUUUUGUCAACUUUUU_
.........((((((((((((.((....)).((((((..((((((((((..........))))))))))....))))))))))))).))))).... (-17.54 = -18.82 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:06 2006