Locus 5773

Sequence ID 2R_DroMel_CAF1
Location 18,299,868 – 18,299,960
Length 92
Max. P 0.991670
window9250

overview

Window 0

Location 18,299,868 – 18,299,960
Length 92
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 78.28
Mean single sequence MFE -18.28
Consensus MFE -10.88
Energy contribution -12.20
Covariance contribution 1.32
Combinations/Pair 1.11
Mean z-score -2.63
Structure conservation index 0.60
SVM decision value 2.28
SVM RNA-class probability 0.991670
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18299868 92 + 20766785
------ACCAUGACAACGACAACUGAUUGACGACAAACUGUCAAUGGCACGAACACAAAACCAAACGAAUACGCAUACGCGUACGUUAUGGCCACCCA-
------.(((((((..((.......(((((((......)))))))((.............))...))..(((((....))))).))))))).......- ( -20.92)
>DroSec_CAF1 97108 92 + 1
------ACCAUGACAACGACAACUGAUUGACGACAAACUGUCAAUGGCACGAACACAAAACCAAACGCAUACGCAUACGCGUACGUUAUGGCCACCCA-
------.(((((((...........(((((((......)))))))........................(((((....))))).))))))).......- ( -20.60)
>DroSim_CAF1 97875 78 + 1
------ACCAUGACAACGACAACUGAUUGACGACAAACUGUCAAUGGCACGAACACAAAACCAAACGCA------UACGCGUACGUUAUG---------
------..((((((...........(((((((......)))))))...................((((.------...))))..))))))--------- ( -15.60)
>DroEre_CAF1 100883 92 + 1
ACAACAACCAUGACAACGCCAACUGAUUGACGACAAACUGUCAAUGGCACGAACACAAAACCAAACGCA------UACGCGUACGUUAUGGCCACCCA-
.......(((((((...((((.....((((((......))))))))))................((((.------...))))..))))))).......- ( -23.60)
>DroAna_CAF1 102197 78 + 1
------ACAACAACAUCGACAACUGAUUGACGGCAAACUGUCAAUGGCACGAACCCGA-------CUCA------CAAGCAGA--CUAUUACCACCAAC
------................(((((((((((....))))))))....((....)).-------....------....))).--.............. ( -10.70)
>consensus
______ACCAUGACAACGACAACUGAUUGACGACAAACUGUCAAUGGCACGAACACAAAACCAAACGCA______UACGCGUACGUUAUGGCCACCCA_
.......(((((((...........(((((((......)))))))...................((((..........))))..)))))))........ (-10.88 = -12.20 +   1.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:05 2006