Locus 5770

Sequence ID 2R_DroMel_CAF1
Location 18,296,124 – 18,296,236
Length 112
Max. P 0.651139
window9244

overview

Window 4

Location 18,296,124 – 18,296,236
Length 112
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 94.20
Mean single sequence MFE -24.92
Consensus MFE -22.18
Energy contribution -22.14
Covariance contribution -0.04
Combinations/Pair 1.13
Mean z-score -1.22
Structure conservation index 0.89
SVM decision value 0.25
SVM RNA-class probability 0.651139
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18296124 112 - 20766785
AACACAAGCGGAAAUAAAUUGAGAAUAACGCUCAUUUACAUUUUGGAGAUCCCAUCUCCGGAUUUCCCGCUUUAAGCUAGGUAAUUUUCAGCGCAAGCCGUUUUUUGUUAUU
((((.(((((.........(((((((.((...............((((((((.......)))))))).((.....))...)).)))))))((....)))))))..))))... ( -26.80)
>DroSec_CAF1 93401 112 - 1
AAUUCAAGCGGAAAUAAAUUGAGAAUAACGCUCAUUUACAUUUCGUAGAUCCCAUCUCCGGAUUUCCCGCUUUAAGCUAGGUAAUUUUCAGCGCAAGCCGUUUUUUGUUAUC
.....((((((...(((((.(((.......))))))))...((((.((((...)))).))))....)))))).......((((((...(.((....)).)......)))))) ( -21.40)
>DroSim_CAF1 94151 112 - 1
AAUACAAGCGGAAAUAAAUUGAGAAUAACGCUCAUUUACAUUUCGGAGAUCCCAUCUCCGGAUUUCCCGCUUUAAGCUAGGUAAUUUUCAGCGCAAGCCGUUUUUUGUUAUC
.....((((((...(((((.(((.......))))))))...(((((((((...)))))))))....)))))).......((((((...(.((....)).)......)))))) ( -28.20)
>DroEre_CAF1 97134 112 - 1
AAUGCAAGCGGAAAUAAAUUGAGGAUAACGCUCAUUUACAUUUCGGAGAUGCCAUCUCCGGAUUUCGCCUUUUAAGCUAGGUAAUUUUCAGCGCAAGCCGUUUUUUGUUAUC
......((((((((.....(((((((...............(((((((((...)))))))))....((((........)))).)))))))((....))...))))))))... ( -26.90)
>DroYak_CAF1 95125 112 - 1
AAUACAAGCGAAAAUAAAUUGAGAGUAACGCUCAUUUACAUUUCGGAAUUGCCAUCUCCGGAUUUCCCCUUUUAAGCUAGGUAAUUUUCAGCGCAAGCCGUUUUUUGUUAUC
......((((((((.....(((((((.((.((..((((......((((...((......))..)))).....))))..)))).)))))))((....))...))))))))... ( -21.30)
>consensus
AAUACAAGCGGAAAUAAAUUGAGAAUAACGCUCAUUUACAUUUCGGAGAUCCCAUCUCCGGAUUUCCCGCUUUAAGCUAGGUAAUUUUCAGCGCAAGCCGUUUUUUGUUAUC
......((((((((.....(((((((.(((((.........(((((((((...)))))))))............)))...)).)))))))((....))...))))))))... (-22.18 = -22.14 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:59 2006