Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,964,633 – 2,964,726 |
Length | 93 |
Max. P | 0.938647 |
Location | 2,964,633 – 2,964,726 |
---|---|
Length | 93 |
Sequences | 3 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 94.98 |
Mean single sequence MFE | -10.75 |
Consensus MFE | -10.35 |
Energy contribution | -10.35 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.20 |
Structure conservation index | 0.96 |
SVM decision value | 1.27 |
SVM RNA-class probability | 0.938647 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2964633 93 - 20766785 CUAGCAAUAUAUUAUAUAUCCCUAUACGAAUCUAUUAGUCUACUUAAACCCAGUGCUAUACUAACAAACAUAUACAAACUAUAACUGGGUUAC .(((..(((((...)))))..)))......................((((((((.............................)))))))).. ( -11.15) >DroSec_CAF1 7758 93 - 1 CAAACAAUAUAUUAUAUAUCCCUAUAAGAAACUAUUAGUCUACUUAAACCCAGUGCUAUACUAACAAACAAAUACAAACGAUAACUGGGUUAC ........................((((..((.....))...))))((((((((.............................)))))))).. ( -10.55) >DroSim_CAF1 6509 93 - 1 CAAACAAUAUAUUAUAUAUACCUAUAAGAAACUAUUAGUCUACUUAAACCCAGUGCUAUACUAACAAACAAAUACAAACGAUAACUGGGUUAC ........................((((..((.....))...))))((((((((.............................)))))))).. ( -10.55) >consensus CAAACAAUAUAUUAUAUAUCCCUAUAAGAAACUAUUAGUCUACUUAAACCCAGUGCUAUACUAACAAACAAAUACAAACGAUAACUGGGUUAC ..............................................((((((((.............................)))))))).. (-10.35 = -10.35 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:01 2006