| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,289,685 – 18,289,806 |
| Length | 121 |
| Max. P | 0.551860 |
| Location | 18,289,685 – 18,289,785 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 90.26 |
| Mean single sequence MFE | -24.46 |
| Consensus MFE | -18.40 |
| Energy contribution | -18.48 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.75 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.517393 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18289685 100 - 20766785 CACAUAUUUUCGCCUGCUGUGCCAGCAAAUUUGUUGCAGGACUCCAGUGCAACAAAAGCUACAGCUGCAGAUACACUGUGAAAAAAACUGUUAAUUC-UU---A ((((.....((((..(((((...(((...(((((((((((...))..))))))))).)))))))).)).)).....)))).................-..---. ( -24.00) >DroSec_CAF1 86988 100 - 1 CACAUAUUUUCGCCUGCUGUGCCAGCAAAUUUGUUGCAGGACUCCAGUGCAACAAAAGCUACAGCUGCAGAUACAAUGAGAAAAAAGCUGUUGAUUC-UU---A ...........((..(((((...(((...(((((((((((...))..))))))))).)))))))).))(((..((((.((.......))))))..))-).---. ( -22.20) >DroSim_CAF1 88222 100 - 1 CACAUAUUUUCGCCUGCUGUGCCAGCAAAUUUGUUGCAGGACUCCAGUGCAACAAAAGCUACCGCUGCAGAUACACUGAGAAAAAAGCUGUUGAUUC-UU---A .............((((.(((..(((...(((((((((((...))..))))))))).)))..))).))))......((((((..((....))..)))-))---) ( -22.70) >DroEre_CAF1 90667 104 - 1 CACAUAUUUUCGCCUGCUGCGCCAGCAAAUUUGUUGCAGGACUCCAGUGCAACAAAAGCUACAACAGCAGAUACACUGCGAAAAUAGGUGGGCAAUCCUUAUGC (((.(((((((((((((((....(((...(((((((((((...))..))))))))).)))....)))))).......))))))))).))).............. ( -33.01) >DroYak_CAF1 88296 100 - 1 CACAUAUUUUCGCCUGCUGUGCCAGCAAAUUUGUUGCAGAACUCCAGUGCAACAAAAGCUACAACUGCAGAUACACUGAGCAAAUAACUGGGAAUUC-UU---C .............((((.((...(((...(((((((((.........))))))))).)))...)).)))).....((.((.......)).)).....-..---. ( -20.40) >consensus CACAUAUUUUCGCCUGCUGUGCCAGCAAAUUUGUUGCAGGACUCCAGUGCAACAAAAGCUACAGCUGCAGAUACACUGAGAAAAAAGCUGUUAAUUC_UU___A .............((((.((...(((...(((((((((.........))))))))).)))...)).)))).................................. (-18.40 = -18.48 + 0.08)
| Location | 18,289,715 – 18,289,806 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 85.96 |
| Mean single sequence MFE | -31.30 |
| Consensus MFE | -23.43 |
| Energy contribution | -25.85 |
| Covariance contribution | 2.42 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.551860 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18289715 91 + 20766785 CUGCAGCUGUAGCUUUUGUUGCACUGGAGUCCUGCAACAAAUUUGCUGGCACAGCAGGCGAAAAUAUGUGCCAGCACAGCAGCCA--CGAAGG ..((.(((((....(((((((((..((...)))))))))))...(((((((((.............)))))))))))))).))..--...... ( -34.72) >DroSec_CAF1 87018 91 + 1 CUGCAGCUGUAGCUUUUGUUGCACUGGAGUCCUGCAACAAAUUUGCUGGCACAGCAGGCGAAAAUAUGUGCCAGCACAGCAGCCA--CGAAGG ..((.(((((....(((((((((..((...)))))))))))...(((((((((.............)))))))))))))).))..--...... ( -34.72) >DroSim_CAF1 88252 91 + 1 CUGCAGCGGUAGCUUUUGUUGCACUGGAGUCCUGCAACAAAUUUGCUGGCACAGCAGGCGAAAAUAUGUGCCACCACAGCAGCCA--CGAAGG ((((.(.((((((.(((((((((..((...)))))))))))...)))((((((.............))))))))).).))))...--...... ( -30.62) >DroEre_CAF1 90701 91 + 1 CUGCUGUUGUAGCUUUUGUUGCACUGGAGUCCUGCAACAAAUUUGCUGGCGCAGCAGGCGAAAAUAUGUGCCAGCACAGCAGCCA--CGAAGG ..((((((((....(((((((((..((...)))))))))))...(((((((((.............)))))))))))))))))..--...... ( -37.22) >DroYak_CAF1 88326 91 + 1 CUGCAGUUGUAGCUUUUGUUGCACUGGAGUUCUGCAACAAAUUUGCUGGCACAGCAGGCGAAAAUAUGUGCCAGCGCAGCAGCCA--CGAAGG .....(((((.((.(((((((((.........)))))))))...(((((((((.............))))))))))).)))))..--...... ( -33.32) >DroPer_CAF1 84489 72 + 1 ------------------UU---GUGUGGUCCUGCAACAAAUUUGCUGGCACAGCAGGCGAAAAUAUGUGCCAACACAGCAGCAUUCUCCAGG ------------------((---((((......((((.....))))(((((((.............))))))))))))).............. ( -17.22) >consensus CUGCAGCUGUAGCUUUUGUUGCACUGGAGUCCUGCAACAAAUUUGCUGGCACAGCAGGCGAAAAUAUGUGCCAGCACAGCAGCCA__CGAAGG ..((.(((((....(((((((((.........)))))))))...(((((((((.............)))))))))))))).)).......... (-23.43 = -25.85 + 2.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:56 2006