Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 18,281,732 – 18,281,834 |
Length | 102 |
Max. P | 0.642305 |
Location | 18,281,732 – 18,281,834 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 79.31 |
Mean single sequence MFE | -21.84 |
Consensus MFE | -13.69 |
Energy contribution | -14.42 |
Covariance contribution | 0.73 |
Combinations/Pair | 1.21 |
Mean z-score | -1.54 |
Structure conservation index | 0.63 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.642305 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18281732 102 - 20766785 AUCCUUCC-UCC-CCUGCUCCCCUGGCUGCAACUUCUUCUUUGUCUUCUAAGCCGUCUUUGGCUGUAAGGAAUUUCCUGUUGGCCAAGCCAAGCCAAGAUUUAU ........-...-...........((((.......(......).......))))(((((.((((...(((.....)))..((((...))))))))))))).... ( -21.04) >DroSec_CAF1 79491 95 - 1 AUCCUUCC-UCCCCCGGCUCCCCUGGCUGCAACUUCUUCUUUGUCUUCUAAGCCAUCUUUGGCUGUAAGGAAUUUCCUGCUGGCCAAGC--------GAUUUAU ........-.......(((....((((((((.....(((((((.......(((((....))))).))))))).....))).))))))))--------....... ( -21.40) >DroSim_CAF1 80568 94 - 1 AUCCCUCC-UCC-CCGGCUCCCCUGGCUGCAACUUCUUCUUUGUCUUCUAAGCCGUCUUUGGCUGUAAGGAAUUUCCUGCUGGCCAAGC--------GAUUUAU ........-...-.(((((.....(((...............))).....)))))(((((((((...(((.....)))...))))))).--------))..... ( -21.66) >DroEre_CAF1 83037 91 - 1 AUCCUUUG-----GCUGCUCCCCUGGCUGCAACUUCUUCUUUGUCUUCUAAGCCGUCUUUGGCUGUAAGGAAUUUGCUGCCGGCCAAGC--------GAUUUAU (((.((((-----(((........(((.((((.(((((............(((((....)))))...))))).)))).)))))))))).--------))).... ( -25.66) >DroYak_CAF1 80522 91 - 1 AUCCUUUG-----GCUGCUCCCCAGGCUGCAACUUCUUCUUUGUCUUCUAAGCCAUCUUUGGCUGUAAGGAAUUUCCUGCCGGCCAUGC--------GAUUUAU ......((-----((((((.....))).((((........))))......)))))((..((((((..(((.....)))..))))))...--------))..... ( -22.10) >DroAna_CAF1 77464 95 - 1 AUCCUUCUCUGG-UCUGCUACC---GCUGCAAGUC---CUUUGUCUUUUAAGCCGUCUUUGGCAGCAAGAAAUCUUCGAGCAGCCAUCACUGAACAAAAUUU-- .........(((-.(((((...---(((((.((.(---(((........)))..).))...)))))(((....)))..))))))))................-- ( -19.20) >consensus AUCCUUCC_UCC_CCUGCUCCCCUGGCUGCAACUUCUUCUUUGUCUUCUAAGCCGUCUUUGGCUGUAAGGAAUUUCCUGCCGGCCAAGC________GAUUUAU ........................(((((((.....(((((((.......(((((....))))).))))))).....))).))))................... (-13.69 = -14.42 + 0.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:54 2006