Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 18,268,426 – 18,268,522 |
Length | 96 |
Max. P | 0.688992 |
Location | 18,268,426 – 18,268,522 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 90.52 |
Mean single sequence MFE | -12.41 |
Consensus MFE | -11.98 |
Energy contribution | -11.60 |
Covariance contribution | -0.37 |
Combinations/Pair | 1.12 |
Mean z-score | -1.34 |
Structure conservation index | 0.96 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.688992 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18268426 96 - 20766785 GAUAACGUUACUGCAGUUGAGUUGUUGCUCCAGACCAACACUUUCAACACCAUC---ACCACCAACCAGCAAACUACCUGUAGCCACCAAAAACCACCA ......((..(((((((((((.(((((........)))))..))))))......---..........((....))...)))))..))............ ( -12.70) >DroSec_CAF1 65298 90 - 1 GAUAACGUUACUGCAGUUGAGUUGUUGCUCAAGACCAACUCUUUCAACACC---------ACCAACCAGCAAACCACCUGUAGCCACCAAAAACCACCA ......((..((((((.((..((((((...((((.....))))........---------......))))))..)).))))))..))............ ( -13.03) >DroEre_CAF1 67942 99 - 1 GAUAACGUUACUGCAGUUGAGUUGUUGCUCAAGACCAACACUUUCAACACCACCACCACCACCAACCAGCAAACCACCUGUAGCCACCAAAAACCACCA ......((..((((((.((..((((((.......................................))))))..)).))))))..))............ ( -12.53) >DroAna_CAF1 65427 97 - 1 GAUAACGUUAUUGCAGUUGAGUUGUUGUUCAAGACCAACACUUUCGACACCACCACCACCACCAACCAGCAAACCACCUGUAGCCACCAAA--CCACCA ............((.((((((.(((((........)))))..))))))..................(((........)))..)).......--...... ( -11.40) >consensus GAUAACGUUACUGCAGUUGAGUUGUUGCUCAAGACCAACACUUUCAACACCACC___ACCACCAACCAGCAAACCACCUGUAGCCACCAAAAACCACCA ......((..((((((.((..((((((.......................................))))))..)).))))))..))............ (-11.98 = -11.60 + -0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:50 2006