Locus 5762

Sequence ID 2R_DroMel_CAF1
Location 18,258,358 – 18,258,448
Length 90
Max. P 0.689177
window9232

overview

Window 2

Location 18,258,358 – 18,258,448
Length 90
Sequences 3
Columns 90
Reading direction forward
Mean pairwise identity 86.30
Mean single sequence MFE -33.90
Consensus MFE -23.65
Energy contribution -24.77
Covariance contribution 1.12
Combinations/Pair 1.11
Mean z-score -2.34
Structure conservation index 0.70
SVM decision value 0.32
SVM RNA-class probability 0.689177
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18258358 90 + 20766785
GGCCCAGCAGCUCCUCCUUUCGAGGCAGAACAAUGGUCGCUGAUGGGAGUUGAGCUGCAGGGAGGGGGCAAUGGGUGCAAUGGUGCAAGG
.((((((((.((((((((..(...((((..((((..((.(....).))))))..)))).)..))))))....)).)))..))).)).... ( -35.10)
>DroSim_CAF1 56538 90 + 1
GGCCCAGGAGCUCCUCCUUUGGAGGCAGAACAAUGGUCGCUGAUGGGAGUUGAGCUGCAGGAAGGGGGGAGUGGGUGCAAUGGUGCAGGG
.((((....(((((((((((....((((..((((..((.(....).))))))..))))...)))))))))))))))(((....))).... ( -34.60)
>DroEre_CAF1 57751 80 + 1
GGCCCAGGAGCUCCUCCUUUGGCGGCAGAACAAUGGUCGCUGAUGGGAGUUGAGCUGCAG--GAGGGGAA--------AAUGGUGCAAGG
.(((((....((((((((...(((((..(((..(.(((...))).)..)))..)))))))--))))))..--------..))).)).... ( -32.00)
>consensus
GGCCCAGGAGCUCCUCCUUUGGAGGCAGAACAAUGGUCGCUGAUGGGAGUUGAGCUGCAGG_AGGGGGAA_UGGGUGCAAUGGUGCAAGG
.(((((...(((((((((((....((((..((((..((.(....).))))))..))))...)))))))....))))....))).)).... (-23.65 = -24.77 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:48 2006