Locus 5761

Sequence ID	2R_DroMel_CAF1
Location	18,242,099 – 18,242,205
Length	106
Max. P	0.682405

overview

Window 1

Location	18,242,099 – 18,242,205
Length	106
Sequences	4
Columns	114
Reading direction	forward
Mean pairwise identity	89.39
Mean single sequence MFE	-22.55
Consensus MFE	-17.00
Energy contribution	-16.38
Covariance contribution	-0.62
Combinations/Pair	1.20
Mean z-score	-1.73
Structure conservation index	0.75
SVM decision value	0.31
SVM RNA-class probability	0.682405
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18242099 106 + 20766785
UUUUAUCUUUAUUUAAUGACUCUAGCAGCAUUUUCUUUAUAGCUAUGCAUUAGUUGAGAUUACUAGACUUGCUGUAGUA----CAUAUG----UACAUAGUUCCCAAUGGAGAU
....(((((((((....((((...((((((...(((((.((((((.....)))))).)).....)))..)))))).(((----(....)----)))..))))...))))))))) ( -22.40)
>DroSec_CAF1 39843 106 + 1
UUUAAUCUUUAUUUAAUGACUCUAGCAGCAUUUUCUUUACAGCUACGUAUUAGUUGAGAUUACUAGACUUGCUGUGGUA----CAUAUG----UACAUAAUUCCCAAUGGAGAU
....(((((((((...........((((((...(((((.((((((.....)))))).)).....)))..)))))).(((----(....)----))).........))))))))) ( -21.70)
>DroSim_CAF1 39994 106 + 1
UUUAAUCUUUAUUUAAUGACUCUAGCAGCAUUUUCUUUACAGCUACGUAUUAGUUGAGAUUACUAGACUUGCUGUAGUA----CAUAUG----UACAUAAUUCCCAAUGGAGAU
....(((((((((...........((((((...(((((.((((((.....)))))).)).....)))..)))))).(((----(....)----))).........))))))))) ( -21.90)
>DroYak_CAF1 40312 114 + 1
UUUAAUCUUUAUUUAAUGACUACAGCUACAUUUACUUUACGGCUAUGUAUUAGCUGAGAUUACUGGACUUGCUGUAGUACCUACAUAUGUACAUAAAUAAUUCCCAAUGGAGAU
....(((((((((.....((((((((..........((.((((((.....)))))).))...........))))))))...(((....)))..............))))))))) ( -24.20)
>consensus
UUUAAUCUUUAUUUAAUGACUCUAGCAGCAUUUUCUUUACAGCUACGUAUUAGUUGAGAUUACUAGACUUGCUGUAGUA____CAUAUG____UACAUAAUUCCCAAUGGAGAU
....(((((((((.....(((.((((((........((.((((((.....)))))).)).........)))))).))).......((((......))))......))))))))) (-17.00 = -16.38 +  -0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:47 2006