| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,240,530 – 18,240,647 |
| Length | 117 |
| Max. P | 0.596251 |
| Location | 18,240,530 – 18,240,647 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 83.26 |
| Mean single sequence MFE | -42.23 |
| Consensus MFE | -28.83 |
| Energy contribution | -30.30 |
| Covariance contribution | 1.47 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.596251 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18240530 117 - 20766785 AGGCCUCCGCUGUCCGACCUGGUCAGCGUCUACCUGGAGAGCACAUCCGGUCGGGUGGGCGAACCGGUGAGUGAAGCAUAUAUAUACAAUAUAUAUAUGAAUGUACAGAUGGUGGCA ..(((.(((((((.(((((.(((...(((((((((((.((.....))...))))))))))).))))))........((((((((((...))))))))))..)).)))).))).))). ( -45.10) >DroSec_CAF1 38321 106 - 1 AGGCCUCCGCUGUCCGAUCUGGUCAGCGUCUACCUGGAGAGCACAUCCGGUCGGGUGGGCGAACCGGUGAGUGAAGCAUAU-----------AUGUAUGCAUGUACAGCUGGUGGCA ..(((.(((((((.((..(((((...(((((((((((.((.....))...))))))))))).)))))........(((((.-----------...))))).)).))))).)).))). ( -44.50) >DroSim_CAF1 38443 110 - 1 AGGCCUCCGCUGUCCGACCUGGUCAGCGUCUACCUGGAGAGCACAUCCGGUCGGGUGGGCGAACCGGUGAGUGAAGCAUAUACA-------UAUAUAUGCAUGUACAGCUGGUGGCA ..(((.(((((((.(((((.(((...(((((((((((.((.....))...))))))))))).)))))).......(((((((..-------..))))))).)).))))).)).))). ( -46.90) >DroEre_CAF1 40248 102 - 1 AGGCCUCCGCUGUCCGACCUGGUCAGCGUUUACCUGGAGAGUACAUCCGGUCGGGUGGGCGAACCGGUGAGUGAGGCAGAU---------------AUGCAUGUACAGCAGAAGGCA ..(((((.(((((.(((((.(((...(((((((((((.((.....))...))))))))))).)))))).......(((...---------------.))).)).))))).).)))). ( -38.40) >DroYak_CAF1 38744 102 - 1 AGGCCGCCGCUCUCCGACCUGGUCAGCGUUUACCUGGAGAGCACAUCCGGUCGGGUGGGCGAACCGGUGAGUGCAGCUUAU---------------AUGCAUGUACAGCAGGCGGCA ..((((((((((((((....(((........))))))))))).((.(((((((......)).))))))).(((((((....---------------..)).)))))....)))))). ( -47.60) >DroAna_CAF1 38153 93 - 1 AGGCCACCGCUCUCCGACCUCAUCAACGUCUACCUGGAGAGCACAUCCGGCCGGGUGGGCGAACCGGUAAGUGAAGCC------------------AUACAUGUAUUGC------CA .(((...((((..((((.....))..(((((((((((.((.....))...)))))))))))....))..))))..)))------------------.............------.. ( -30.90) >consensus AGGCCUCCGCUGUCCGACCUGGUCAGCGUCUACCUGGAGAGCACAUCCGGUCGGGUGGGCGAACCGGUGAGUGAAGCAUAU_______________AUGCAUGUACAGCUGGUGGCA ..(((.(((((((.((..(((((...(((((((((((.((.....))...))))))))))).)))))...(.....)........................)).))))).)).))). (-28.83 = -30.30 + 1.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:46 2006