| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,231,990 – 18,232,103 |
| Length | 113 |
| Max. P | 0.922998 |
| Location | 18,231,990 – 18,232,103 |
|---|---|
| Length | 113 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.89 |
| Mean single sequence MFE | -23.40 |
| Consensus MFE | -14.16 |
| Energy contribution | -14.35 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.31 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.61 |
| SVM decision value | 1.15 |
| SVM RNA-class probability | 0.922998 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18231990 113 - 20766785 AAUGCUUUCAAUUGGCUAAAUAUGUGUGUGUGUGGCAAUUUAAACUUUCAUUUAUUUGCUA------AUAGAGUACAAUUAUUUUUAUGUCUGAUGGGGAUAAUUUGUUUAGUUUUCUU- .............(((((((((((((..(...((((((..((((......)))).))))))------...)..))))(((((((((((.....))))))))))).))))))))).....- ( -18.80) >DroSim_CAF1 29881 109 - 1 AAUGCUUUCAAUUGACUAAAU----GUGUUUGUGGCAAUUUAAACUUUCAUUUAUUUGCUA------AUAGAGCACAAUUAUUUUCAUGUCUGAUGAAGAUAAUUUGUUUAGUUUUCUU- .............((((((((----((((((.((((((..((((......)))).))))))------...))))))((((((((((((.....)))))))))))).)))))))).....- ( -27.50) >DroEre_CAF1 31674 109 - 1 AGUCAUAUUAAUUGACUACAUU----UGCUUGUGGCAACAUAGACUUUCAUUUAUUUGCCA------UUAGAGUGCAAUUAUUUUCA-CUCUGAUGAAGAUAAUUUGCUUAGUUUUCUUU (((((.......))))).....----....((((....))))((((..((.((((((..((------((((((((.((....)).))-)))))))).))))))..))...))))...... ( -26.60) >DroYak_CAF1 30165 119 - 1 ACUGAUUUUAAUUGACCAAAUUAA-UUAUUUGUGGCAAUUUAAACUUUCAUUUACUUGCUAUUCGUAUUAGAGUGCAAUUAUUUUCGUCUCUAAUGAUGAUAAUUUGAUUAGUUUUCUCU ...((....((((((.(((((((.-......(((((((..((((......)))).)))))))(((((((((((((.((....)).)).))))))).))))))))))).)))))).))... ( -20.70) >consensus AAUGAUUUCAAUUGACUAAAUU___GUGUUUGUGGCAAUUUAAACUUUCAUUUAUUUGCUA______AUAGAGUACAAUUAUUUUCAUCUCUGAUGAAGAUAAUUUGUUUAGUUUUCUU_ .............((((((((....((((((.((((((..((((......)))).)))))).........))))))((((((((((((.....)))))))))))).))))))))...... (-14.16 = -14.35 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:39 2006