| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,219,030 – 18,219,144 |
| Length | 114 |
| Max. P | 0.707990 |
| Location | 18,219,030 – 18,219,144 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 75.34 |
| Mean single sequence MFE | -29.31 |
| Consensus MFE | -11.69 |
| Energy contribution | -11.47 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.35 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.40 |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.707990 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18219030 114 + 20766785 UCAACAGACUUCAUUAUGGAGGUGAUAUUUCAACAUUUCCCCACUCAAAAACAGAUGACCUUCGAAUGCGACCUCUUUAUCUCCUUCCAGGAGGGACACCUCCAUCAACGGCAC- ...............(((((((((.............................(((((...(((....))).....)))))((((((...))))))))))))))).........- ( -23.60) >DroPse_CAF1 16906 107 + 1 UCAUUCCACUUCAUCAUGGAAGUGGUCUUCGAGCACUUCCCCAGCAAAAAACAGACCUCCUUCGAAUGCGAUCUCUUCAUUGCAUUCGACGAGGGGCACAU--------GGCACC .....(((.........(((((((.((...)).))))))).............(.(((((.(((((((((((......))))))))))).).)))))...)--------)).... ( -33.10) >DroEre_CAF1 18836 114 + 1 UCAACCGACUUCAUUAUGGAGGUGAUAUUUCAGCAUUUUCCCACCCAAAAACAGGCGACCUUCGAAUGCGACCUCUUUAUCUCCUUCCAGGAAGGACACCUCCACCAACGGCAC- ....(((.........((((((((........((((((((((...........)).)).....))))))............((((((...))))))))))))))....)))...- ( -26.42) >DroYak_CAF1 17128 114 + 1 UCAACUGACUUCAUUAUGGAGGUGAUAUUUCAGCAUUUUCCCAGUCGAAAACAGGCCACCUUCGAAUGCGACCUCUUCAUCUCCUUCCAGGAGGGACACCUCCACCAGCGGCAC- .(..(((..........((((((((.......((((((.....(((.......))).......)))))).......)))))))).....(((((....)))))..)))..)...- ( -31.34) >DroAna_CAF1 17358 114 + 1 UCCUCGGACUUCAUCAUGGAUGUGGUCUUCCAGCACUUUCCCAGUCGCCGCAUGAUGACCUUCGAGUGUGACCUCUUCAUUUCAUUCGAUGAGGGAAAAAUUAGCUAUCAGAAC- (((((((...((((((((....(((....)))(((((.....))).))..)))))))))).((((((((((.....)))...))))))).)))))...................- ( -28.30) >DroPer_CAF1 16846 107 + 1 UCAUUCCACUUCAUCAUGGAAGUGGUCUUCGAGCACUUCCCCAGCAAAAAACAGACCUCCUUCGAAUGCGAUCUCUUCAUUGCAUUCGACGAGGGGCACAU--------GGCACC .....(((.........(((((((.((...)).))))))).............(.(((((.(((((((((((......))))))))))).).)))))...)--------)).... ( -33.10) >consensus UCAACCGACUUCAUCAUGGAGGUGAUAUUCCAGCACUUCCCCAGCCAAAAACAGACCACCUUCGAAUGCGACCUCUUCAUCUCAUUCCAGGAGGGACACAUCCACCA_CGGCAC_ ........((((......(((((((.......((((((.........................)))))).......))))))).......))))..................... (-11.69 = -11.47 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:38 2006