| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,217,445 – 18,217,549 |
| Length | 104 |
| Max. P | 0.534786 |
| Location | 18,217,445 – 18,217,549 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 78.47 |
| Mean single sequence MFE | -33.82 |
| Consensus MFE | -21.94 |
| Energy contribution | -24.00 |
| Covariance contribution | 2.06 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.534786 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18217445 104 + 20766785 ------------UAACACACAAACUCCUAAU--UCAAGCAGCAGCAGCUUCUCGUACUGCUCCAAGGUAAACGAGCGGGAGGAGCUGGAGCACGAGCUCCAUGUGCUCGAUGCGAUCA ------------...................--....(((((..(((((((((...((((((..........)))))))))))))))..)).(((((.......))))).)))..... ( -35.30) >DroSec_CAF1 15286 104 + 1 ------------UAAUACACAAACUCCUAAU--UCAAGCAGCAGCAGCUUCUCGUACUGCUCCAAGGUGAACGAGCGGGAGGAGCUGGAGCACGAGCUCCAUGUGCUCGAUGCGAUCA ------------...................--....(((((..(((((((((...((((((..........)))))))))))))))..)).(((((.......))))).)))..... ( -35.30) >DroSim_CAF1 15483 104 + 1 ------------UAGUACACAAACUCCUAAU--UCAAGCAGCAGCAGCUUCUCGUACUGCUCCAAGGUGAACGAGCGGGAGGAGUUGGAGCACGAGCUCCAUGUGCUCGAUGCGAUCA ------------.((((((..(((((((...--...((.(((....))).))....((((((..........)))))).)))))))(((((....))))).))))))........... ( -33.60) >DroEre_CAF1 17195 104 + 1 ------------UAGCGCACAAGCUCCAAAC--UCCAGCAGCAGCAGCUUCUCGUACUGCUCCAAGGUGAACGAGCGGGAGGAGCUGGACCACGAGCUCCAUGUCCUCGACUUGAUCA ------------.((.(((..(((((.....--(((.((....))((((((((...((((((..........)))))))))))))))))....)))))...))).))........... ( -30.10) >DroYak_CAF1 15544 104 + 1 ------------CAACACAAAAACGCCCAAU--UCGAGCAGCACCAGCUUCUCCUACUGCUCCAAGGUGAACGAGCGGGAGGAGCUGGAGCACGAGCUCCAUGUCCUCGAUGCGAUCA ------------...........(((.....--(((((..(((..((((((((((...((((..........))))))))))))))(((((....))))).))).))))).))).... ( -38.20) >DroPer_CAF1 15276 118 + 1 UCGGACGUGAAGUCGGACGGGAGCUCCGGCUCCUCAACAGGAAGCAGUUUCUCCUACACCUCCAAGAUCAAUGAGAGCGCUGAGCUGAAGAACGAACUUGAAGUGAUCACCGCCGUCA ..(((.(((.((((((((....).))))))).......((((.........)))).))).)))........(((..(((.((((((.(((......)))..)))..))).)))..))) ( -30.40) >consensus ____________UAACACACAAACUCCUAAU__UCAAGCAGCAGCAGCUUCUCGUACUGCUCCAAGGUGAACGAGCGGGAGGAGCUGGAGCACGAGCUCCAUGUGCUCGAUGCGAUCA ............................................(((((((((...((((((..........)))))))))))))))..((((((((.......))))).)))..... (-21.94 = -24.00 + 2.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:37 2006