Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 18,216,127 – 18,216,224 |
Length | 97 |
Max. P | 0.946301 |
Location | 18,216,127 – 18,216,224 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 79.79 |
Mean single sequence MFE | -18.43 |
Consensus MFE | -13.77 |
Energy contribution | -14.10 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.64 |
Structure conservation index | 0.75 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.752736 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18216127 97 + 20766785 CUCUUAAAAAGCAGCAGACUACUAAUCAGUUUGUCUGAAAUCGAUAUCGCCUACUAAGAUAU------UGUUAGAUAUUGUUAGGCAUUUGAAGAAACUGUUU ........(((((((((((.(((....)))..)))))...((((....(((((....(((((------(....))))))..)))))..)))).....)))))) ( -22.20) >DroSec_CAF1 13993 86 + 1 CUCUUAAAAGGCAGCAGACUACUAAUCAGUUUGUCUGAAUUUGAUAUCGCCUACUAAGAUUUUUUAAAUAUUAGAUAUUGUUAAGC----------------- .(((((..((((..(((((.(((....)))..))))).....(....)))))..)))))...........................----------------- ( -15.80) >DroSim_CAF1 14177 86 + 1 CUCUUAAAAGGCAGCAGACUACUAAUCAGUUUGUCUGAAAUUGAUAUCGCCUACUAAGAUUUUUUAACUAUUAGAUAUUGUUAAGC----------------- .(((((..((((..(((((.(((....)))..))))).....(....)))))..)))))...((((((...........)))))).----------------- ( -17.30) >consensus CUCUUAAAAGGCAGCAGACUACUAAUCAGUUUGUCUGAAAUUGAUAUCGCCUACUAAGAUUUUUUAA_UAUUAGAUAUUGUUAAGC_________________ .(((((..((((..(((((.(((....)))..))))).....(....)))))..)))))............................................ (-13.77 = -14.10 + 0.33)
Location | 18,216,127 – 18,216,224 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 79.79 |
Mean single sequence MFE | -16.03 |
Consensus MFE | -14.92 |
Energy contribution | -14.70 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.05 |
Mean z-score | -1.06 |
Structure conservation index | 0.93 |
SVM decision value | 1.36 |
SVM RNA-class probability | 0.946301 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18216127 97 - 20766785 AAACAGUUUCUUCAAAUGCCUAACAAUAUCUAACA------AUAUCUUAGUAGGCGAUAUCGAUUUCAGACAAACUGAUUAGUAGUCUGCUGCUUUUUAAGAG ...((((((..((....(((((...((((......------)))).....)))))((........)).)).))))))...(((((....)))))......... ( -16.30) >DroSec_CAF1 13993 86 - 1 -----------------GCUUAACAAUAUCUAAUAUUUAAAAAAUCUUAGUAGGCGAUAUCAAAUUCAGACAAACUGAUUAGUAGUCUGCUGCCUUUUAAGAG -----------------...........................((((((.(((((....).....(((((..(((....))).)))))..)))).)))))). ( -15.60) >DroSim_CAF1 14177 86 - 1 -----------------GCUUAACAAUAUCUAAUAGUUAAAAAAUCUUAGUAGGCGAUAUCAAUUUCAGACAAACUGAUUAGUAGUCUGCUGCCUUUUAAGAG -----------------..(((((...........)))))....((((((.(((((....).....(((((..(((....))).)))))..)))).)))))). ( -16.20) >consensus _________________GCUUAACAAUAUCUAAUA_UUAAAAAAUCUUAGUAGGCGAUAUCAAUUUCAGACAAACUGAUUAGUAGUCUGCUGCCUUUUAAGAG ............................................((((((.(((((....).....(((((..(((....))).)))))..)))).)))))). (-14.92 = -14.70 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:36 2006