Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 18,213,518 – 18,213,634 |
Length | 116 |
Max. P | 0.640496 |
Location | 18,213,518 – 18,213,634 |
---|---|
Length | 116 |
Sequences | 6 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 81.61 |
Mean single sequence MFE | -39.56 |
Consensus MFE | -29.56 |
Energy contribution | -30.15 |
Covariance contribution | 0.59 |
Combinations/Pair | 1.29 |
Mean z-score | -1.44 |
Structure conservation index | 0.75 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.640496 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18213518 116 - 20766785 CGCCAGUUCUUCCACAACUGCCCGGCGGAUCGCUGGUCGAAGACCAAGGAGUGCGAGGAUACCCUGGCCUUCAGCAAGAAGUGCCAGGACUCGCUGGCUACUUUGUGAAUAAUGAG .((((((((((((((..((((...)))).((..(((((...)))))..))))).)))))...((((((((((.....)))).))))))....)))))).................. ( -44.00) >DroVir_CAF1 38699 116 - 1 CGACAAUUCUUCCACAAUUGUCCCGCCGAUCGUUGGUCCAAGUCCGCGGAGUGCGAGAACGUAUUGGCCUUUAGUCAGAACUGUCGCGAUUCCUUGGCCACUUUGUAAAGAGUUGA ...((((((((..(((((((..(((.(....).)))..)))(.(((.(((((((((.(..((.(((((.....))))).))).)))).))))).))).)...)))).)))))))). ( -33.30) >DroSec_CAF1 11390 116 - 1 CGCCAGUUCUUCCACAACUGUCCGGCGGAUCGCUGGUCCAAGACCAAGGAGUGCGAGGACACCCUGGCCUUCAGCAAGAAGUGCCAGGACUCCCUUGCUACCUUGUAAAUAAUGAG .((((((...(((.(.........).)))..)))))).......(((((...((((((....((((((((((.....)))).))))))....))))))..)))))........... ( -42.40) >DroEre_CAF1 11275 110 - 1 CGCCAGUUCUUCCACAACUGUCCGGCGGAUCGCUGGUCCAAGACCAAGGAGUGCGAGGACACCCUGGCCUUCAGCAAGAAGUGCCAGAACUCGCUGGCCACUUUGUGAAC------ .((((((((((((((......((((((...))))))(((........)))))).)))))....(((((((((.....)))).))))).....))))))............------ ( -41.40) >DroYak_CAF1 11517 116 - 1 CGCCAGUUCUUCCACAAUUGUCCGGCGGAUCGCUGGUCCAAGACCAAGGAGUGCGAGGACACGCUGGCCUUCAGCAGGAAGUGCCAGGACUCGCUGGCUACAUUGUAAAUAAUGAU .((((((((((((((......((((((...))))))(((........)))))).)))))....(((((((((.....)))).))))).....))))))..(((((....))))).. ( -43.20) >DroAna_CAF1 11897 116 - 1 CGCCAGUUCUUCCACAAUUGUCCUGCUGAUCGUUGGUCCAAGACUAAGGAGUGUGAGGACACUUUGGCCUUUAGCAAAACAUGCCAGGACGCAUUGGCCUCAUUGUAAUUCCUGAA .((((((.(.(((.....((((((((...((.((((((...)))))).))..)).))))))...((((..............))))))).).)))))).................. ( -33.04) >consensus CGCCAGUUCUUCCACAACUGUCCGGCGGAUCGCUGGUCCAAGACCAAGGAGUGCGAGGACACCCUGGCCUUCAGCAAGAAGUGCCAGGACUCGCUGGCCACUUUGUAAAUAAUGAA .((((((((((((((......(((((.....)))))(((........)))))).)))))....(((((((((.....)))).))))).....)))))).................. (-29.56 = -30.15 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:34 2006