| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,204,711 – 18,204,819 |
| Length | 108 |
| Max. P | 0.874481 |
| Location | 18,204,711 – 18,204,819 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 80.31 |
| Mean single sequence MFE | -29.90 |
| Consensus MFE | -23.23 |
| Energy contribution | -22.77 |
| Covariance contribution | -0.47 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.89 |
| SVM RNA-class probability | 0.874481 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18204711 108 - 20766785 ACCAUUGAGGCGGAUUUCGAUGCAGCUUCUGCCAAUGAUUUGUCAGCAGCUCGAACUUUGCUGACGGGAAAGGUAAGCUAACAU----AAUCACUAAAAGCGAAAUCCGAAA .((.....))((((((((((((.((((..((((.....(((((((((((........)))))))))))...))))))))..)))----............)))))))))... ( -30.20) >DroSec_CAF1 2597 108 - 1 ACCAUUGAGGCGGAUUUCGAUGCAGCUUCUGCCCAUGAUUUGUCAGCAGCUCGUACUUUGCUGACAGGAAAGGUAAG----CAUAAUAAAUCACUAAGGGCGAUAUCCGAAA .((.....))(((((.((((.......)).((((....(((((((((((........)))))))))))...(((...----........))).....)))))).)))))... ( -29.00) >DroSim_CAF1 2599 112 - 1 ACCAUUGAGGCGGAUUUCGAUGCAGCUUCUGCCAAUGAUUUGUCAGCAGCUCGAACUUUGCUGACAGGAAAGGUAAGCUAACAUAAUCAAUCACUAGAAGCGAAAUCCGAAA .((.....))((((((((((((.((((..((((.....(((((((((((........)))))))))))...))))))))..)))......((....))..)))))))))... ( -32.80) >DroEre_CAF1 2580 108 - 1 ACCAUUGAGGCUGAUUUCGAUGCAGCUUCUGCCAAUGAUUUGUCAGCAGCUCGAACGUUGCUGACAGGAAAGGUAAGCUUA----AAUAAUUACUAAAAGGAAAAAACCUAA .((...(((((((.........)))))))((((.....((((((((((((......))))))))))))...))))......----..............))........... ( -30.80) >DroYak_CAF1 2608 108 - 1 ACCAUUGAGGCGGACUUCGAUGCAGCUUCUGCCAAUGAUUUGUCAGCAGCUCGAACUUUGCUGACAGGAAAGGUGAGCUAU----AUCAAUCACUAAAAGAGAAAAUCCGUA .........(((((.(((((((.(((((..(((.....(((((((((((........)))))))))))...)))))))).)----)))..((.......)))))..))))). ( -31.00) >DroAna_CAF1 3621 99 - 1 ACUAUUGGAGAGGAUUUCGAUGCGGCUUCUGCCAAUGACUUAUCAGCAGCUCGAACUCUGCUCACUGGAAAGGUAAGCCCACG------------AA-UGAGAUUCCUGAUA ..(((..(.(((...((((.((.(((((((.(((.(((.......((((........))))))).)))...)).)))))))))------------))-.....))))..))) ( -25.61) >consensus ACCAUUGAGGCGGAUUUCGAUGCAGCUUCUGCCAAUGAUUUGUCAGCAGCUCGAACUUUGCUGACAGGAAAGGUAAGCUAACA__AU_AAUCACUAAAAGCGAAAUCCGAAA ..((((((((....)))))))).(((((..(((.....(((((((((((........)))))))))))...))))))))................................. (-23.23 = -22.77 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:25 2006