Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 18,197,394 – 18,197,497 |
Length | 103 |
Max. P | 0.831589 |
Location | 18,197,394 – 18,197,497 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 78.75 |
Mean single sequence MFE | -28.52 |
Consensus MFE | -19.19 |
Energy contribution | -19.13 |
Covariance contribution | -0.05 |
Combinations/Pair | 1.25 |
Mean z-score | -1.64 |
Structure conservation index | 0.67 |
SVM decision value | 0.72 |
SVM RNA-class probability | 0.831589 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18197394 103 - 20766785 AACGGAGUUUCUGCUUUUUUUGGAGUUAUCGUUAAUAUUUUCCUGGAAACCGGG-AUUGUGUUG------UUGCUGCU---CUUGC-GUUCGCAGGUAGCGAGCAGCGAUCGCA ...(((((....))))).......((.(((...(((((..((((((...)))))-)..)))))(------((((((((---(((((-....))))).))).))))))))).)). ( -35.60) >DroPse_CAF1 22377 83 - 1 AACA----------UUU-UUUGGAGUUAUCGUUAAUAUUUUCUUGGAAACCGGG-AUUGUAUUG------UU------------GC-GCUCGCAGGUAGCGAACAGCGAUCGCA ....----------...-......((.(((((((((((..((((((...)))))-)..)))))(------((------------.(-((((....).))))))))))))).)). ( -21.80) >DroEre_CAF1 23198 102 - 1 AACGUAGUUUCUGCUUU-UUUGGAGUUAUCGUUAAUAUUUUCCUGGAAACCGGG-CUUGUGUUG------UUGCUGCU---CUUGC-GUUCGCAGGUAGCGAGCAGCGAUCGCA ((((....((((.....-...))))....))))........(((((...)))))-..(((((((------((((((((---(((((-....))))).))).)))))))).)))) ( -33.70) >DroYak_CAF1 24064 106 - 1 AACGUAGUUUCUGCUUU-UUUGGACCUAUCGUUAAUAUUUUCCUGGAAACCGAGAACUGUGUUG------UUGUUGCCCCGCUUGC-GUUCGCAGGUAGCGAGCAGCGAUCGCA (((((((((..((.(((-(..(((..(((.....)))...)))..)))).))..)))))))))(------(((((((((..(((((-....)))))..).).)))))))).... ( -30.00) >DroAna_CAF1 22440 100 - 1 AGAG---------GUUU-UUUGGAGUUAUCGUUAAUAUUUUCCUGGAAACCGGG-AUUGUGUUGGAUGUUUUGUUGUU---GUUGCUGCUCGCAGGUAGCGAGAAACGAUCACA ....---------....-......((.(((((((((((..((((((...)))))-)..))))))............((---.((((((((....)))))))).))))))).)). ( -28.20) >DroPer_CAF1 22319 83 - 1 AACA----------UUU-UUUGGAGUUAUCGUUAAUAUUUUCUUGGAAACCGGG-AUUGUAUUG------UU------------GC-GCUCGCAGGUAGCGAACAGCGAUCGCA ....----------...-......((.(((((((((((..((((((...)))))-)..)))))(------((------------.(-((((....).))))))))))))).)). ( -21.80) >consensus AACG_________CUUU_UUUGGAGUUAUCGUUAAUAUUUUCCUGGAAACCGGG_AUUGUGUUG______UUG_UGCU___CUUGC_GCUCGCAGGUAGCGAGCAGCGAUCGCA ........................((.(((((((((((...(((((...)))))....)))))........................((((((.....)))))))))))).)). (-19.19 = -19.13 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:17 2006