Locus 5744

Sequence ID 2R_DroMel_CAF1
Location 18,196,172 – 18,196,265
Length 93
Max. P 0.882003
window9199

overview

Window 9

Location 18,196,172 – 18,196,265
Length 93
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 79.08
Mean single sequence MFE -38.25
Consensus MFE -23.52
Energy contribution -24.74
Covariance contribution 1.22
Combinations/Pair 1.20
Mean z-score -2.06
Structure conservation index 0.61
SVM decision value 0.92
SVM RNA-class probability 0.882003
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18196172 93 - 20766785
AACA---AUCGCGGUGUUGAACAAUCUGAAUAGCCACUGUGGCGGAUCCGGGAG------CAA------CGGAGCGGCCACCAGUGGCGGCGCGGC---GAUUGGCGGAGC
..((---(((((.(((((((....))......(((((((((((.(.((((....------...------)))).).)))).)))))))))))).))---)))))....... ( -45.80)
>DroSec_CAF1 21439 93 - 1
AACA---AUCGCGGUGUUAAACAAUCUGAAUAGCCACUGUGGCGGAUCCGGGAG------CAA------UGGAGCGGCCACCAGUGGCGGCUCGGC---GAUUGGCGGAGC
..((---(((((.(.(((...(.....)....(((((((((((.(.((((....------...------)))).).)))).)))))))))).).))---)))))....... ( -39.20)
>DroSim_CAF1 21482 93 - 1
AACA---AUAACGGUGUUAAACAAUCUGAAUAGCCACUGUGGCGGAUCCGGGAG------CAA------CGGAGCGGCCACCAGUGGCGGCUCGGC---GAUUGGCGGAGC
....---.....(((........)))......(((((((((((.(.((((....------...------)))).).)))).))))))).((((.((---.....)).)))) ( -38.10)
>DroEre_CAF1 22026 93 - 1
AACA---AUCGCGGUGUUGAACAAUCUGAAUAGCCACUGUGGCGGAUCCGGGAG------CAA------CGGUGCGGCCACCAGUGGUGGAGCGGC---GAUUGGCGGAGC
..((---(((((.((...((....))......(((((((((((.(..(((....------...------)))..).)))).)))))))...)).))---)))))....... ( -36.90)
>DroYak_CAF1 22788 78 - 1
AACA---AUCGCGGUGUUGAACAAUUUGAAUAGCCACUGUGGCGGAUCCGGGAG------CAA------CGGAGCGGCCCCCAGUG------------------GCGGCGC
....---..(((.((.....))..........(((((((.(((.(.((((....------...------)))).).)))..)))))------------------)).))). ( -29.60)
>DroAna_CAF1 21169 108 - 1
GACAACGAUCGCUGUUCUCAACAAUCUGAAUAACCACUGCGGUGGAUCCGGGGCCGGAGGUAAUGGAGCCGGAGCGGCUACCAGUGG---AUCGGGAAUGAACGGUGGCGC
.....((.(((((((((.......(((((....((((((.(((.(.(((((..(((.......)))..))))).).)))..))))))---.)))))...))))))))))). ( -39.90)
>consensus
AACA___AUCGCGGUGUUGAACAAUCUGAAUAGCCACUGUGGCGGAUCCGGGAG______CAA______CGGAGCGGCCACCAGUGGCGGCUCGGC___GAUUGGCGGAGC
........((((.((.....))...(((....(((((((((((.(.((((...................)))).).)))).)))))))....))).........))))... (-23.52 = -24.74 +   1.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:16 2006