| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,190,820 – 18,190,921 |
| Length | 101 |
| Max. P | 0.638755 |
| Location | 18,190,820 – 18,190,921 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 80.32 |
| Mean single sequence MFE | -36.18 |
| Consensus MFE | -21.29 |
| Energy contribution | -24.03 |
| Covariance contribution | 2.74 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.638755 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18190820 101 + 20766785 G-UGGCUCCGUUUGCCUGCCCAUGUC--------GGCGCAUUGAUAAGAUAAGCGAUAGCCGUAGGGCGGAGAGUCGGGCUGUCUGACAUCAGGCAAAUGGACCCCAGAA (-.((.(((((((((((((((.((.(--------(((..((((..........)))).))))))))))...(((((((.....))))).))))))))))))).))).... ( -42.80) >DroSec_CAF1 16049 101 + 1 G-UGACUCCGUUUGCCUGCCCAUGUC--------GACGCAUUGAUAAGAUAAGCGAUAGCCCUAGGGCGGAGAGUCGGGCUGUCUGACAUCAGGCAAAUGGACCCCAGAA .-....((((((((((((...(((((--------(..((.............))((((((((...(((.....)))))))))))))))))))))))))))))........ ( -40.62) >DroSim_CAF1 16109 101 + 1 G-UGACUCCGUUUGCCUGCCCAUGUC--------GACGCAUUGAUAAGAUAAGCGAUAGCCCUAGGGCGGAGAGUCGGGCUGUCUGACAUCAGGCAAAUGGACCCCAGAA .-....((((((((((((...(((((--------(..((.............))((((((((...(((.....)))))))))))))))))))))))))))))........ ( -40.62) >DroEre_CAF1 16612 101 + 1 G-UGGCUCCGUUCGGCUGCCCAUGUC--------GACGCAUUGAUAAGAUAAGCGAUAGCCUAAGGGCGGAGAGUCGGGAAGUCUGACAUCGGGCAAAUGGAGCCCAGAA (-.(((((((((....((((((((((--------(((...(((((..(.....)....(((....))).....)))))...))).))))).))))))))))))))).... ( -39.70) >DroYak_CAF1 17326 110 + 1 GUUGGCUCCGUUUGGCUGUCCAUGUCGAGAACUCGACGCAUUGAUAAGAUAAGCAAUAGCCAAAGGGCGCAGAGUCGGGAGUUCUGACAUCGGGCAAUUGGACCCCAGAA .((((....(((..(.((((((((((.((((((((((((.............))....(((....))).....)))..)))))))))))).))))).)..))).)))).. ( -37.42) >DroPer_CAF1 15143 79 + 1 G-UGGCUUGCUUUGUUUGCCCACGUC--------GAC----UGAUAAGAUAAGCAAUAGCCCAA-----------------GUCUGACAUCAGGG-CCUGGACCUCCGAA (-(((...((.......)))))).((--------(.(----((((.((((..((....))....-----------------))))...)))))((-......))..))). ( -15.90) >consensus G_UGGCUCCGUUUGCCUGCCCAUGUC________GACGCAUUGAUAAGAUAAGCGAUAGCCCAAGGGCGGAGAGUCGGGCUGUCUGACAUCAGGCAAAUGGACCCCAGAA ...((.(((((((((((((((..((((......))))...............((....))....)))).....(((((.....)))))...))))))))))).))..... (-21.29 = -24.03 + 2.74)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:11 2006