| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 2,957,360 – 2,957,458 |
| Length | 98 |
| Max. P | 0.854102 |
| Location | 2,957,360 – 2,957,458 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 71.51 |
| Mean single sequence MFE | -33.25 |
| Consensus MFE | -16.64 |
| Energy contribution | -16.75 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.50 |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.854102 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2957360 98 - 20766785 GAAGGGCGUGGGCAAGACGGCGCUGAUAGAGCAGCUGGUCUACGGCCACGUCAAUCCCGAAACGGUGAGAAUGCC--------------UUUGGCAGAGCU-----CAAAGUAAAGC ((..(((((((.(.((((.(.((((......))))).))))..).)))))))..)).....((..((((..((((--------------...))))...))-----))..))..... ( -36.60) >DroGri_CAF1 4823 108 - 1 GAAAAAUGUGGGCAAAACAGCACUUAUUGAGCAAUUGGUAUAUGGCAAAAUCAACACCGAAACCGUAAGUGGGUCGUGUCACGAUUCUUUUCGUCACUGCU-----CGCAA----AU ......((((((((.....((...(((..(....)..)))....))...........(((..((....).)..))).((.((((......)))).))))))-----)))).----.. ( -26.70) >DroSim_CAF1 4779 98 - 1 GAAGGGCGUGGGCAAGACGGCGCUUAUAGAGCAGCUGGUCUACGGCCACGUCAAUCCGGAAACGGUGAGAAGGCC--------------UUUGGCAGUGCU-----CAAAGUAAAGC ....(((((((.(.(((((((((((...)))).))).))))..).)))))))...(((....)))((((...(((--------------...)))....))-----))......... ( -37.60) >DroEre_CAF1 4913 94 - 1 GAAGGGCGUGGGCAAGACGGCGCUGAUAGAGCAGCUGGUCUACGGCCACGUCAAUCCAGAAACGGUGAGAAAGCC--------------UUUGACCGUGCU-----CAAAA----GC ((..(((((((.(.((((.(.((((......))))).))))..).)))))))..))..((.(((((.(((.....--------------))).)))))..)-----)....----.. ( -34.30) >DroYak_CAF1 4674 94 - 1 GAAGGGCGUGGGCAAGACGGCGCUGAUAGAGCAGCUGGUCUACGGCCACGUCAAUCCAGAGACGGUGAGAAAGCC--------------UUUGGCCGUGUU-----UAAAC----UG ((..(((((((.(.((((.(.((((......))))).))))..).)))))))..)).(((.(((((.(((.....--------------))).))))).))-----)....----.. ( -35.20) >DroAna_CAF1 4882 92 - 1 GAAGGGCGUGGGUAAAACGGCCCUUAUAGAGCAGCUGGUUUACGGCCACGUCAACCCGGAGACGGUGAGUGGG---------------------CAGAAAUAUGUAUGAGA----AC .((((((((.......)).)))))).....(((....((((..(.((((.(((..(((....)))))))))).---------------------)..)))).)))......----.. ( -29.10) >consensus GAAGGGCGUGGGCAAGACGGCGCUGAUAGAGCAGCUGGUCUACGGCCACGUCAAUCCAGAAACGGUGAGAAGGCC______________UUUGGCAGUGCU_____CAAAA____GC ....(((((((.(.((((((((((.....))).))).))))..).)))))))................................................................. (-16.64 = -16.75 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:57 2006