| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,187,931 – 18,188,032 |
| Length | 101 |
| Max. P | 0.973959 |
| Location | 18,187,931 – 18,188,032 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 92.92 |
| Mean single sequence MFE | -39.32 |
| Consensus MFE | -34.12 |
| Energy contribution | -34.95 |
| Covariance contribution | 0.83 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.32 |
| Structure conservation index | 0.87 |
| SVM decision value | 1.72 |
| SVM RNA-class probability | 0.973959 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18187931 101 - 20766785 UCAGCAUCCUUUUGUGCGCAGGAGAAUAGAGCAGCGGCGGAAGUGCUUUGUCGCCAUUGAUGUGACAACGACUUCCGCUGUCUCAGCCUGACCUGGGCAGU ........((((((....))))))....(((..(((((((((((.(.(((((((.......))))))).))))))))))))))).((((.....))))... ( -40.10) >DroSec_CAF1 13172 101 - 1 UCAGCAUCCUUUUGUGCGCAGGAGAAUAGAGCAGCGGCGGAAGUGCUUUGUCGCCAUUGAUGUGACAACGACUUCCGCUGUCUCAGCCUUACCUGGGCAGU ........((((((....))))))....(((..(((((((((((.(.(((((((.......))))))).))))))))))))))).((((.....))))... ( -40.20) >DroSim_CAF1 13206 101 - 1 UCAGCAUCCUUUUGUGCGCAGGAGAAUAGAGCAGCGGCGGAAGUGCUUUGUCGCCAUUGAUGUGACAACGACUUCCGCUGUCUCAGCCUGACCUGGCCAGU ........((((((....))))))....(((..(((((((((((.(.(((((((.......))))))).))))))))))))))).(((......))).... ( -38.60) >DroEre_CAF1 13415 98 - 1 ---GCAUCCUUUUGUGCGCAGGAGAAUAGAGCAGCGGCGGAAGUGCUUUGUCGCCAUUGAUGUGACAACGACUUCCGCUGUCUCAGCCUGACCUGGGCAGU ---.....((((((....))))))....(((..(((((((((((.(.(((((((.......))))))).))))))))))))))).((((.....))))... ( -40.10) >DroYak_CAF1 14171 97 - 1 ---GCAUCCU-UUGUGCGCAGGAGAAUAGAGCAGCGGCGGAAGUGCUUUGUCGCCAUUGAUGUGACAACGACUUCCGCUGUCUCAGCCUGACCUGGGCAGU ---.......-...(((.((((....(((.((.(((((((((((.(.(((((((.......))))))).))))))))))))....))))).)))).))).. ( -39.80) >DroAna_CAF1 13253 94 - 1 CCAGCAUCCUUUUGUCC----GAUAACAGAGGAGC---GGAAGUGCUUUGUCGCCAUUGAUGUGACAACGACUUCCGCUGUCUCGGCCUGACCUGGGCAGC ...((.((((((.((..----....))))))))))---((((((.(.(((((((.......))))))).)))))))(((((((.((.....)).))))))) ( -37.10) >consensus UCAGCAUCCUUUUGUGCGCAGGAGAAUAGAGCAGCGGCGGAAGUGCUUUGUCGCCAUUGAUGUGACAACGACUUCCGCUGUCUCAGCCUGACCUGGGCAGU ...((((......))))...........(((..(((((((((((.(.(((((((.......))))))).))))))))))))))).((((.....))))... (-34.12 = -34.95 + 0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:05 2006