Locus 5738

Sequence ID 2R_DroMel_CAF1
Location 18,187,736 – 18,187,837
Length 101
Max. P 0.550480
window9186

overview

Window 6

Location 18,187,736 – 18,187,837
Length 101
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 79.30
Mean single sequence MFE -35.77
Consensus MFE -24.26
Energy contribution -24.93
Covariance contribution 0.67
Combinations/Pair 1.22
Mean z-score -1.19
Structure conservation index 0.68
SVM decision value 0.03
SVM RNA-class probability 0.550480
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18187736 101 - 20766785
AGGAGCGGCGGGGCGGUGGCGGAGGCGGAGCAGCGUUGUGAGGGGGUGGCUAAGUCACCGACAACGGCGCACAUCAAAGGCUUCGUCAAAGUUCUCAUUCU-----
((((...(.(((((..((((((((.(.((...(((((((..(..((((((...))))))..).)))))))...))...).))))))))..)))))).))))----- ( -40.90)
>DroSec_CAF1 12996 87 - 1
--------------GGGGGCGGCGGCGGGGCAGCGUUGUGAGGGGGUGGCUAAGUCACCGACAACGGCGCACAUCAAAGGCUUCGUCAAAGUUCUCAUUCU-----
--------------((((((...((((((((.(((((((..(..((((((...))))))..).))))))).(......)))))))))...)))))).....----- ( -37.10)
>DroSim_CAF1 13031 86 - 1
--------------GG-GGCGGCGGCGGAGCAGCGUUGUGAGGGGGUGGCUAAGUCACCGACAACGGCGCACAUCAAAGGCUUCGUCAAAGUUCUCAUUCU-----
--------------((-(((...((((((((.(((((((..(..((((((...))))))..).))))))).(......)))))))))...)))))......----- ( -34.30)
>DroEre_CAF1 13222 99 - 1
AGGAGCGGCG--GCGGAGGCGGAGGCGGUGCGGCGCCGUGAGGGGGUGGCUAAGUCACCGACAACGGCGCACAUCAAAGGCUUCGUCAAAGUUCUCAUUCU-----
.(((((...(--((((((((....))((((..(((((((..(..((((((...))))))..).))))))).)))).....)))))))...)))))......----- ( -43.40)
>DroYak_CAF1 13968 91 - 1
CAGAGGGGCG--G--------GGGGCGGAGCAGCGCUGUGUGGGGGUGGCUAAGUCAGCGACAACGGCGCACAUCAAAGGCUUCGUCAAAGUUCUCAUUCU-----
..(((((.(.--.--------..((((((((.(((((((.((..(.((((...)))).)..))))))))).(......)))))))))...)))))).....----- ( -34.60)
>DroAna_CAF1 13040 88 - 1
--------------AA-GGAG--CACGGAGCA-CGGAGCACGGGGGUGGUUAAGUCAGCGACAACGGCGCACAUCAAAGGCUUCGUCAAAGUUCUCGUUCUACGUA
--------------..-((((--(..((((((-((((((.(...(((((......).(((.......))).))))...))))))))....))))).)))))..... ( -24.30)
>consensus
______________GG_GGCGGAGGCGGAGCAGCGUUGUGAGGGGGUGGCUAAGUCACCGACAACGGCGCACAUCAAAGGCUUCGUCAAAGUUCUCAUUCU_____
.......................((((((((.(((((((..(..((((((...))))))..).))))))).(......)))))))))................... (-24.26 = -24.93 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:04 2006