| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,174,929 – 18,175,024 |
| Length | 95 |
| Max. P | 0.877620 |
| Location | 18,174,929 – 18,175,024 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 74.89 |
| Mean single sequence MFE | -30.65 |
| Consensus MFE | -20.71 |
| Energy contribution | -21.18 |
| Covariance contribution | 0.47 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.90 |
| SVM RNA-class probability | 0.877620 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18174929 95 - 20766785 CAUGGCAAUGCGGGCAGGUGAUGAAGGUGGGAUCCGGACCCACCGGCAAUACAGCUUGAUCUGCAAGUCAUUGU-----CAAUGU-----UAAUCUUA----UGUCUGU--- ..(((((((((..((((((.(....((((((.......))))))(((......)))).))))))..).))))))-----))....-----........----.......--- ( -32.60) >DroSec_CAF1 250 95 - 1 CAUGGCAAUGCGGGCAGGUGAUGAAGGUGGGAUCCGGACCCACCGGCAAUACAGUUUGAUCUGCAAGUCAUGGU-----CAAUCU-----UAAUCUUA----UUUGCGU--- ((((((..((((((((.(((.((..((((((.......))))))..)).)))....)).)))))).))))))..-----......-----........----.......--- ( -29.30) >DroSim_CAF1 250 95 - 1 CAUGGCAAUGCGGGCAGGUGAUGAAGGUGGGAUCCGGACCCACCGGUAAUACAGUUUGAUCUGCAAGUCAUGGU-----CAAUCU-----UAAUCUUA----UUUGCGU--- ((((((..((((((((.(((.((..((((((.......))))))..)).)))....)).)))))).))))))..-----......-----........----.......--- ( -27.90) >DroEre_CAF1 166 91 - 1 CAUGGCAGUGCGGGCAGGUGAUGAAGGUGGGAUCCGGACCCACCGGCAAUACGGUCUGAUCUGUAAGUCAUUGU-----CAUGCAUA----UAUAUUU----UU-------- (((((((((((..((((((.(....((((((.......))))))(((......)))).))))))..).))))))-----))))....----.......----..-------- ( -33.90) >DroYak_CAF1 170 101 - 1 UGUGGCAGUGCGGGCAGGUGAUGAAGGUGGGAUCCGGACCCACCGGCAAUACAGUUUGAUCUGUAAGUCAUUGU-----CAUUCGCUUCAUUAUCUUA----UUA-CUU-UA ...(..((((.((((..((((..(.((((((.......))))))(((..(((((......))))).))).)..)-----)))..))))))))..)...----...-...-.. ( -32.30) >DroPer_CAF1 169 105 - 1 CAUGGCAGUGGGGACAGGUAAUGAAGCUGGCGUCAGGACCCACAGGCAAAGCAGCUUGGUCUGGAAGAAAUCAUGGCCUCAGC-------UCGGCUUGGACAGAGAAAUAGA ...........(..(((((...((.(((((.(((((((((...((((......))))))))).((.....)).)))).)))))-------)).)))))..)........... ( -27.90) >consensus CAUGGCAAUGCGGGCAGGUGAUGAAGGUGGGAUCCGGACCCACCGGCAAUACAGUUUGAUCUGCAAGUCAUUGU_____CAAUCU_____UAAUCUUA____UUU_CGU___ .(((((..((((((((((((.((..((((((.......))))))..)).)))...))).)))))).)))))......................................... (-20.71 = -21.18 + 0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:00 2006