Locus 5733

Sequence ID 2R_DroMel_CAF1
Location 18,163,356 – 18,163,466
Length 110
Max. P 0.930589
window9180

overview

Window 0

Location 18,163,356 – 18,163,466
Length 110
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 78.12
Mean single sequence MFE -36.27
Consensus MFE -25.38
Energy contribution -27.30
Covariance contribution 1.92
Combinations/Pair 1.25
Mean z-score -1.86
Structure conservation index 0.70
SVM decision value 1.21
SVM RNA-class probability 0.930589
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18163356 110 - 20766785
GAAACCGUGGAGAUGACAGGAGCACUGGGCCAGCUCAGUUGCCUCUUGUCCACUUUAUCCUGGUAGGAAACUUCGGAAUUCGGAAAGGAAUCUAAGUCCAUGGAUUAACA
....(((((((...(((((((((((((((....))))).)).)))))))).......((((....(((..(....)..)))....)))).......)))))))....... ( -38.30)
>DroGri_CAF1 7639 98 - 1
GAAACGGUGCAAAUGACCGGCGCUUUGGGCCAGCUCAGUUGUCUGCUCUCCGUUUUGUCCUGGUAAGCAA---UGGAAGUUUAAA---------CAGCCAACAGUUAUAU
(((((((.(((.(..((.(((((.....))..)).).))..).)))...)))))))...(((.(((((..---.....)))))..---------)))............. ( -21.00)
>DroSec_CAF1 10930 110 - 1
GAAACCGUGGAGAUGACAGGAGCACUGGGCCAGCUCAGCUGCCUCUUGUCCACUUUGUCCUGGUAGGAAACUCAGGAAUUCGGAAAGGUGUCUAAGUCCAUGGAUUAACU
....(((((((...(((((((((((((((....))))).)).))))))))((((((.(((((..((....))))))).......))))))......)))))))....... ( -43.60)
>DroSim_CAF1 10824 99 - 1
GAAACCGUGGAGAUGACAGGAGCACUGGGCCAGCUCAGCUGCCUCUUGUCCACUUUGUCCUGGUAGGAAACUCGGGAAUUUGGAAAGG-----------AUGGGUUAACU
..(((((((((.....(((((((((((((....))))).)).)))))))))))....(((((..((....)))))))...........-----------...)))).... ( -33.30)
>DroEre_CAF1 7446 110 - 1
GAAACCGUGGAGAUGACAGGAGCACUGGGCCAGCUCAGCUGCCUCCUGUCCGCCUUGUCCUGGUAGGAAGCUCUAGAAUUCUGAAUGGAAUCUAUAUCCAUGGACUAACG
....(((((((...(((((((((((((((....))))).)).)))))))).((....(((.....))).))..((((.((((....))))))))..)))))))....... ( -40.80)
>DroYak_CAF1 6166 106 - 1
GAAACCGUGGAGAUGACAGGAGCGCUGGGCCAGCUCAGCUGCCUCUUGUCCACGUUGUCCUGGUAGGAAACUCCUGAAUUCUAAGCGG----UUAGUCCAUGGAUUAACU
....(((((((...(((((((((((((((....)))))).).))))))))..((((.((..((.((....)))).))......)))).----....)))))))....... ( -40.60)
>consensus
GAAACCGUGGAGAUGACAGGAGCACUGGGCCAGCUCAGCUGCCUCUUGUCCACUUUGUCCUGGUAGGAAACUCCGGAAUUCGGAAAGG____UAAGUCCAUGGAUUAACU
....(((((((...(((((((((((((((....))))).)).)))))))).........((((.((....))))))....................)))))))....... (-25.38 = -27.30 +   1.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:58 2006