Locus 5731

Sequence ID 2R_DroMel_CAF1
Location 18,161,444 – 18,161,534
Length 90
Max. P 0.700192
window9178

overview

Window 8

Location 18,161,444 – 18,161,534
Length 90
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 80.57
Mean single sequence MFE -21.57
Consensus MFE -12.89
Energy contribution -13.25
Covariance contribution 0.36
Combinations/Pair 1.10
Mean z-score -1.94
Structure conservation index 0.60
SVM decision value 0.35
SVM RNA-class probability 0.700192
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18161444 90 + 20766785
AAAUGACUGACCCAAUGAUGUCCACCGCAUACGUGGUCAUCACAUCCUUGAUCUCCACUUCAUCG----------CUUUGGUCAAGGGCCCCCUCCAAAU
...............(((((.((((.......)))).)))))..(((((((((............----------....)))))))))............ ( -21.79)
>DroSim_CAF1 8932 90 + 1
AAAUGACCGACCCAAUGAUGUCCACCGCAUAGGUGGUCAUCACAUCCUUGAUCUCCACUUCGUCG----------CUUUCGUCAAGGGCCCCCUGCAAAU
...((((((((....(((((.(((((.....))))).))))).......((........))))))----------.....))))(((....)))...... ( -25.80)
>DroEre_CAF1 5535 90 + 1
AAAUCACCGAUCCAAUGAUGUCUACCGCAUAGGUGGUCAUCACAUCCUUGAUCUCCACUUCGUCG----------CUUUGGUCUAGAGCACCCUCCAAGU
..((((..(((....(((((.(((((.....))))).))))).)))..))))............(----------(((((...))))))........... ( -20.20)
>DroYak_CAF1 4317 90 + 1
AAAUGACCGACCCAAUGAUGUCCACCGCAUAGGUGGUCAUCACAUCCUUGAUCUCCACCUCGUCG----------CUUUGGUCCAGUGCUCCCUCCAAGU
....((((((..(..(((((.(((((.....))))).)))))((....))..............)----------..))))))................. ( -22.60)
>DroAna_CAF1 3863 90 + 1
AAAUAACGGAACCUAUUAUGUCCACGGCAUAGGUGGUCAUCACAUCCUUAAUCUCAACCACCUCG----------UUUUGCUCCAGGGUGCCCUCCAGAU
......((((((....(((((.....)))))((((((...................))))))..)----------)))))((..(((....)))..)).. ( -18.11)
>DroPer_CAF1 7404 99 + 1
AGAUCACCGACCCAAUGAUGUCCACCGCAUAGGUGGUCAUCAUUUCCUUAAUCUCGAUCUCAUUGUCCGCCCCCGCCCU-CUCCAGCACGCCCUUCAAGU
(((((........(((((((.(((((.....))))).)))))))...........)))))..............((...-.....))............. ( -20.91)
>consensus
AAAUGACCGACCCAAUGAUGUCCACCGCAUAGGUGGUCAUCACAUCCUUGAUCUCCACCUCGUCG__________CUUUGGUCCAGGGCCCCCUCCAAAU
...............(((((.(((((.....))))).))))).......................................................... (-12.89 = -13.25 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:56 2006