Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,956,679 – 2,956,799 |
Length | 120 |
Max. P | 0.999302 |
Location | 2,956,679 – 2,956,799 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 76.67 |
Mean single sequence MFE | -29.85 |
Consensus MFE | -19.89 |
Energy contribution | -22.32 |
Covariance contribution | 2.44 |
Combinations/Pair | 1.22 |
Mean z-score | -2.26 |
Structure conservation index | 0.67 |
SVM decision value | 2.03 |
SVM RNA-class probability | 0.986236 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2956679 120 + 20766785 AAUGGAUCAAUACGAGUACGAUUGGGGAGAUCCCAAGGAUCUCUUGAACUUAAAGCCAAAUCUGUGGCAUUCAUAGCUACUGUUAAGUAUCGGAGAUUAUUGGGACACUCCCGAAUAAAA .......((((.((....))))))(((((.((((((.(((((((.((((((((..........(((((.......)))))..)))))).))))))))).))))))..)))))........ ( -37.80) >DroSec_CAF1 4005 120 + 1 AAUGGAUCAAUACGAGUACGAUUAGGGAGGUCCCGAAAAUCUCUUCAACUUAAAGCGAAGACUGUGGCAUUCACAACUACAUUAAGGUCUCUGAGAUUAUUGGAACACUCCCGAGUAAAA ................(((.....(((((((.((((.((((((.....(((((.(...((..((((.....)))).)).).)))))......)))))).)))).)).)))))..)))... ( -27.90) >DroSim_CAF1 4098 120 + 1 AAUGGAUCAAUACGAGUACGAUUGGGGAGGUCCCGAAAAUCUCUUCAACUUAAAGCAGAGUCUGUUGCAUUGAGAGCUACUUUUAAGUUUCUGAGAUUAUUGGAACACUCCCGAAUAAAA .......((((.((....))))))(((((((.((((.((((((...(((((((((...((.((.((.....)).))))..)))))))))...)))))).)))).)).)))))........ ( -34.40) >DroEre_CAF1 4264 92 + 1 AAUUGAUCAAUACGA-UACGAUUGGGGAGGACCCGAAAAUCUCUUUAACUUAAAGCAAA---------------------------GUCGCUGAGAUUUUGAGAACACUCCUGAAUAAAA ((((((((.....))-).))))).(((((....(.((((((((....((((......))---------------------------))....))))))))..)....)))))........ ( -19.30) >consensus AAUGGAUCAAUACGAGUACGAUUGGGGAGGUCCCGAAAAUCUCUUCAACUUAAAGCAAAGUCUGUGGCAUUCA_AGCUACUUUUAAGUCUCUGAGAUUAUUGGAACACUCCCGAAUAAAA ....................(((.(((((((.((((.((((((....(((((((.......(((((.....))))).....)))))))....)))))).)))).)).))))).))).... (-19.89 = -22.32 + 2.44)
Location | 2,956,679 – 2,956,799 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 76.67 |
Mean single sequence MFE | -31.05 |
Consensus MFE | -20.58 |
Energy contribution | -20.70 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.23 |
Mean z-score | -2.85 |
Structure conservation index | 0.66 |
SVM decision value | 3.50 |
SVM RNA-class probability | 0.999302 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2956679 120 - 20766785 UUUUAUUCGGGAGUGUCCCAAUAAUCUCCGAUACUUAACAGUAGCUAUGAAUGCCACAGAUUUGGCUUUAAGUUCAAGAGAUCCUUGGGAUCUCCCCAAUCGUACUCGUAUUGAUCCAUU ........(((((.(((((((..(((((....((((((((.......))...((((......)))).))))))....)))))..))))))))))))((((((....)).))))....... ( -36.10) >DroSec_CAF1 4005 120 - 1 UUUUACUCGGGAGUGUUCCAAUAAUCUCAGAGACCUUAAUGUAGUUGUGAAUGCCACAGUCUUCGCUUUAAGUUGAAGAGAUUUUCGGGACCUCCCUAAUCGUACUCGUAUUGAUCCAUU ........(((((.(((((...((((((...(((.((((.(((((((((.....))))).))..)).)))))))...))))))...))))))))))((((((....)).))))....... ( -32.20) >DroSim_CAF1 4098 120 - 1 UUUUAUUCGGGAGUGUUCCAAUAAUCUCAGAAACUUAAAAGUAGCUCUCAAUGCAACAGACUCUGCUUUAAGUUGAAGAGAUUUUCGGGACCUCCCCAAUCGUACUCGUAUUGAUCCAUU ........(((((.(((((...((((((...((((((((.((((.(((.........)))..))))))))))))...))))))...))))))))))((((((....)).))))....... ( -36.00) >DroEre_CAF1 4264 92 - 1 UUUUAUUCAGGAGUGUUCUCAAAAUCUCAGCGAC---------------------------UUUGCUUUAAGUUAAAGAGAUUUUCGGGUCCUCCCCAAUCGUA-UCGUAUUGAUCAAUU .........((((.(..((.((((((((...(((---------------------------((......)))))...)))))))).))..))))).((((((..-.)).))))....... ( -19.90) >consensus UUUUAUUCGGGAGUGUUCCAAUAAUCUCAGAGACUUAAAAGUAGCU_UGAAUGCCACAGACUUUGCUUUAAGUUGAAGAGAUUUUCGGGACCUCCCCAAUCGUACUCGUAUUGAUCCAUU ........(((((.(((((...((((((............((.((.......)).))....((.((.....)).)).))))))...))))))))))((((((....)).))))....... (-20.58 = -20.70 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:56 2006