Locus 5729

Sequence ID 2R_DroMel_CAF1
Location 18,153,984 – 18,154,077
Length 93
Max. P 0.977272
window9175

overview

Window 5

Location 18,153,984 – 18,154,077
Length 93
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 71.85
Mean single sequence MFE -24.50
Consensus MFE -9.03
Energy contribution -9.87
Covariance contribution 0.84
Combinations/Pair 1.15
Mean z-score -2.22
Structure conservation index 0.37
SVM decision value 1.79
SVM RNA-class probability 0.977272
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18153984 93 + 20766785
CGUUUUUUAUGUUUUUGUCGAAAUAUCGAUGCUUAAGUGUGACCAUUCGAUGAC--------------GAUGUCUGAUGAUCACACAUUCGGGCGGAA-AAUUCAAAU----
.(((((((........(((((....)))))(((..(((((((.((((.(((...--------------...))).)))).))))))..)..)))))))-)))......---- ( -22.20)
>DroSec_CAF1 1264 84 + 1
CUUUUUCUAUGUUCUUGUCCAAAUAUCGAUGCUUAAGUGUGACCAUUCGUU---------------------------GUUCACACAUUCGGGCGGGA-AAUUCAAAUUGCC
...........(((((((((...((........)).((((((.((.....)---------------------------).))))))....))))))))-)............ ( -19.30)
>DroSim_CAF1 2446 80 + 1
CUUUUUCUAUGUUCUUGUCCAAAUAUCGAUGCUUAAGUGUGACCAUUCGUU---------------------------GUUCAUACAUUCGGGCGGGA-AAUUCAAAU----
...........(((((((((...((........)).((((((.((.....)---------------------------).))))))....))))))))-)........---- ( -17.40)
>DroEre_CAF1 1291 104 + 1
--UUUUCUA-GUUUUUAUCGAUAUAUCGAUGCUUAAGUGUGACCAUUCGAUGGCAGCGUUGGCACGCAAAUUUUUGAUGGUCACACAUUUUGGCGGAA-AAUUCGAAA----
--.((((.(-(((((((((((....)))))(((...(((((((((((.((.....((((....)))).....)).))))))))))).....))).)))-)))).))))---- ( -32.70)
>DroYak_CAF1 2588 99 + 1
GUUUUUCUAUGUUUUUGUCGAAAUAUCGGCGAAUAAGUGUGACCAUUCGAUGG---------UAAGCAAAUUUCGGAUGGCCACACAUUCUGGCGGAAAAAUUCAAAA----
((((((((.....((((((((....))))))))...(((((.((((((((...---------..........)))))))).)))))........))))))))......---- ( -30.92)
>consensus
CUUUUUCUAUGUUUUUGUCGAAAUAUCGAUGCUUAAGUGUGACCAUUCGAUG_________________AU_U__GAUGGUCACACAUUCGGGCGGAA_AAUUCAAAU____
............((((((((...((........)).((((((.((((............................)))).))))))....)))))))).............. ( -9.03 =  -9.87 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:53 2006