Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 18,145,245 – 18,145,338 |
Length | 93 |
Max. P | 0.988475 |
Location | 18,145,245 – 18,145,338 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 75.50 |
Mean single sequence MFE | -27.62 |
Consensus MFE | -15.18 |
Energy contribution | -16.02 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.35 |
Mean z-score | -2.55 |
Structure conservation index | 0.55 |
SVM decision value | 2.12 |
SVM RNA-class probability | 0.988475 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18145245 93 + 20766785 AAUCGGCAACAAUUGGUGUUUCUACAGC-----UGUUGACU--AAAGAAAUACCGGUGUGCACACAC--UGUCAAGGCCUAUCGAUAAGA-AAUCGAUGGGUC ....(((.......(((((((((..(((-----....).))--..)))))))))(((((....))))--))))..(((((((((((....-.))))))))))) ( -33.90) >DroPse_CAF1 26383 94 + 1 G---CGCAACAAUUAGUGGUUUGGUGGCCUCGAUGUUUAUUCCAAGUUAA-----AUGUGGACACACCAUGCUGAAG-AUAUCGAUGUUAGUAUCGAUGGUUC .---(((........)))((.(((((...((.(((((((........)))-----)))).))..))))).)).(((.-.((((((((....)))))))).))) ( -22.80) >DroSec_CAF1 28878 93 + 1 AAUCGGCAACAAUUGGUGUUUUUACAGC-----UGUUGACU--AAAAUAAUACCGGUGUGCACACAC--UGCCAAGCCCUAUCGAUAAGA-AAUCGAUGGGUC ....(((..((((.(.(((....))).)-----.))))...--...........(((((....))))--))))....(((((((((....-.))))))))).. ( -27.50) >DroSim_CAF1 30810 93 + 1 AAUCGGCAACAAUUGGUGUUUCUACAGC-----UGUUGACU--AAAAUAAUACCGGUGUGCACACAC--UGCCAAGCCCUAUCGAUAAGA-AAUCGAUGGGUC ....(((..((((.(.(((....))).)-----.))))...--...........(((((....))))--))))....(((((((((....-.))))))))).. ( -27.50) >DroEre_CAF1 30354 93 + 1 AACCAGCAACAAUUGCUGUUGCUACAGC-----UGUUGGAC--AAAUUAAUACUGGUGUGCAUACAC--UGCCGAAGUCUAUCGAUAAGA-AAUCGAUAGGCC ..((((((......(((((....)))))-----))))))..--..........(((((((....)))--.))))..((((((((((....-.)))))))))). ( -30.00) >DroYak_CAF1 30456 93 + 1 AACCAGCAACAAUUGGUGUUGCUACAAC-----UGUUGGAU--UAACUAAUACUGGUGUGCACACAC--UGCCGAUGCACGUCGAUAAGA-AAUCGAUAAGUC .((((((((((.....))))))).....-----((((((..--...))))))..)))((((((....--....).)))))((((((....-.))))))..... ( -24.00) >consensus AAUCGGCAACAAUUGGUGUUUCUACAGC_____UGUUGACU__AAAAUAAUACCGGUGUGCACACAC__UGCCAAGGCCUAUCGAUAAGA_AAUCGAUGGGUC ..((((((......(.(((....))).).....))))))...............((((((....)))...)))...((((((((((......)))))))))). (-15.18 = -16.02 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:45 2006