Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 18,143,002 – 18,143,111 |
Length | 109 |
Max. P | 0.571619 |
Location | 18,143,002 – 18,143,111 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 78.51 |
Mean single sequence MFE | -41.50 |
Consensus MFE | -18.94 |
Energy contribution | -19.03 |
Covariance contribution | 0.09 |
Combinations/Pair | 1.37 |
Mean z-score | -2.14 |
Structure conservation index | 0.46 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.571619 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18143002 109 - 20766785 UCUUCCCAGAGGCCUUCACAUAAUUGCUGACUUUGUCACCGAAGAGGAGGAGUCAACGCUGUUGAGGGCCAUUGGCGAGGAUGGCAGAACCUCCGAAGUCACGGGAUCU ...((((...((((((((((....((.(((((((....((.....)).))))))).)).)).))))))))..((((..(((.((.....)))))...)))).))))... ( -38.50) >DroPse_CAF1 24253 103 - 1 GCUGCCCAGUGGGCUCAUCGUAUUGCCAGACUUUGUCAGCGAUGCGGAGGAGGCGACGCUGCUUAGAUCCAUUGCCGAAGAUGGCAGAUCGUAUGAGGGCA------CC ..(((((.((.(.(((.(((((((((..(((...))).)))))))))..))).).))........((((...((((......))))))))......)))))------.. ( -38.80) >DroSec_CAF1 26645 109 - 1 UCUUCCCGGAGGCCUUCACAUAAUAGCUGACUUUGUCACCGAAGAGGAGGAGUCAACGCUGUUGAGGGCCAUUGGAGAGGAUGGCAGAACCUCCGAAGGCACGGGAACU ..((((((...((((((....(((((((((((((....((.....)).)))))))..))))))((((((((((......))))))....)))).)))))).)))))).. ( -46.00) >DroSim_CAF1 28570 109 - 1 UCUUCCCGGAGGCCUUCACAUAAUAGCUGACUUCGUCACCGAAGAGGAGGAGUCAACGCUGUUGAGGGCCAUUGGAGAGGAUGGCAGAACCUCCGAAGGCACGGGAACU ..((((((...((((((....(((((((((((((....((.....)).)))))))..))))))((((((((((......))))))....)))).)))))).)))))).. ( -47.70) >DroYak_CAF1 28228 109 - 1 UCUUCCCAAUGGUCUUCAUGUAAUUGCUGACUUUGUCAGCGAAGAGGAGGAGUCAACACUGUUGAGGGCCAUUGGUGGGGAUGGCAGAACCUCCGAAGUCACGGGAACU ..(((((..(((.((((......((((((((...))))))))...(((((..(((((...)))))..((((((......))))))....)))))))))))).))))).. ( -42.00) >DroPer_CAF1 24918 103 - 1 GCUGCCCAGUGGGCUCAUUGUACUGCCAGACUUUGUCAGCGAUGCGGAGGAGGCGACGCUGCUUAGAUCCAUUGCCGAAGAUGGCAGAUCUUAUGAGGGCA------CC (((((((...))))((((....((((((..(((((...(((((..(((..(((((....)))))...))))))))))))).)))))).....)))).))).------.. ( -36.00) >consensus UCUUCCCAGAGGCCUUCACAUAAUAGCUGACUUUGUCACCGAAGAGGAGGAGUCAACGCUGUUGAGGGCCAUUGGCGAGGAUGGCAGAACCUCCGAAGGCACGGGAACU .((((((((.((((((((.(((.....(((((((..(........)..)))))))....))))))))))).)))).))))............................. (-18.94 = -19.03 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:44 2006