| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,137,292 – 18,137,392 |
| Length | 100 |
| Max. P | 0.599109 |
| Location | 18,137,292 – 18,137,392 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 78.61 |
| Mean single sequence MFE | -37.58 |
| Consensus MFE | -27.61 |
| Energy contribution | -26.95 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.04 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.599109 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18137292 100 + 20766785 G-CCCUGCCCUCCGCAAAAAAAAACAGUGCUUGCCGCGAUGCGAGGGCUGUGGUAUCUUCGACCGCUGCUUCCAGUAUCCGCGAAGGGAGCUGGAGCGCGA (-(((.((((((.(((...........(((.....))).))))))))).).))).........(((.(((.(((((.(((.....))).))))))))))). ( -37.90) >DroVir_CAF1 27770 87 + 1 U-CGCUGC-------------ACUCAGUGCUUGCCCCGCUGCGAGGGCUGCGGCAUCUUUGAUCGCUGCUUUCAGUAUCCGCGCCGGGAGCUGGAGCGCGA .-.(((((-------------(....((.(((((......))))).))))))))........((((.((((.((((.((((...)))).)))))))))))) ( -35.00) >DroGri_CAF1 23383 87 + 1 U-GGCUGC-------------ACUCAGUGCUUGCCGCGCUGCGAGGGUUGCGGAAUCUUCGAUCGUUGCUUUCAGUAUCCGCGCAGGGAACUGGAGCGCGA .-(((.((-------------((...))))..)))(((((((((.(((((.((...)).))))).))))..(((((.(((.....))).)))))))))).. ( -35.80) >DroEre_CAF1 22437 96 + 1 G-CCCUGCCCCCCGACG----AAACAGUGCUUGCCGCGGUGCGAGGGCUGUGGUAUCUUCGACCGCUGCUUCCAGUAUCCGCGGAGGGAGCUGGAGCGCGA (-(((.((.(((..((.----.....)).....((((((((((..(((.(((((.......))))).)))..).))).)))))).))).)).)).)).... ( -40.00) >DroMoj_CAF1 28061 88 + 1 UGCGCUGC-------------AAUCAGUGCUUGCCCCGUUGCGAGGGCUGCGGCAUCUUCGAUCGCUGCUUUCAGUAUCCGCGACGGGAGCUCGAGCGCGA .(((((((-------------(.....)))..(((((((((((...(((((((((((...))).)))))....)))...))))))))).))...))))).. ( -39.50) >DroAna_CAF1 24324 88 + 1 G-GAAU-----CC-------GGAACAGUGCUUGCCUCGGUGCGAGGGAUGCGGCAUAUUUGACCGCUGUUUCCAGUAUCCGCGGCGGGAACUGGAACGCGA .-...(-----((-------(...((((.((((((.((((((..((((.((((((....)).))))...)))).))).))).)))))).))))...)).)) ( -37.30) >consensus G_CGCUGC_____________AAACAGUGCUUGCCGCGCUGCGAGGGCUGCGGCAUCUUCGACCGCUGCUUCCAGUAUCCGCGAAGGGAGCUGGAGCGCGA ........................((((.(((((......))))).)))).............(((.(((.(((((.(((.....))).))))))))))). (-27.61 = -26.95 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:43 2006