Locus 5722

Sequence ID 2R_DroMel_CAF1
Location 18,133,149 – 18,133,242
Length 93
Max. P 0.987142
window9163

overview

Window 3

Location 18,133,149 – 18,133,242
Length 93
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 72.15
Mean single sequence MFE -22.93
Consensus MFE -9.35
Energy contribution -10.13
Covariance contribution 0.78
Combinations/Pair 1.14
Mean z-score -2.54
Structure conservation index 0.41
SVM decision value 2.07
SVM RNA-class probability 0.987142
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18133149 93 - 20766785
ACUUCCAAGGAGAAAU---CGACUGCAAGCA-------AACGA----------------AUUCCUUGGCAACAGC-GCACAAAGCCAGCUUAUUUGGCUACACAUAUGCCAUAUACAAAU
....((((((((...(---((..((....))-------..)))----------------.))))))))....(((-((.....))..)))(((.((((.........)))).)))..... ( -20.20)
>DroSec_CAF1 16920 93 - 1
ACUUCCAAGGAGAAAU---CGACCGCAAGCA-------CACGA----------------AUUCCUUGGCAACAGC-GCACAAAGCCAGCUUAUUUGGCUACACAUAUGCCAUAUACAAAU
....((((((((...(---((..(....)..-------..)))----------------.))))))))....(((-((.....))..)))(((.((((.........)))).)))..... ( -19.90)
>DroSim_CAF1 18826 94 - 1
ACUUCCAAGGAGAAAU---CCACCGCAAGCA-------CACGA----------------AUUCCUUGGCAACAGCCACACAAAGCCAGCUUAUUUGGCUACACAUAUGCCAUAUACAAAU
........(((....)---))...(((....-------.....----------------......((((....)))).....((((((.....)))))).......)))........... ( -19.20)
>DroEre_CAF1 18244 105 - 1
ACUUCCAAGGAAUAAU---CGACCGCAAGCA-------CUCGAGUUCUCGAGUUCUCGAGUUCCUUGGCAACAGC-ACA--AAGCCAGCUUAUUUGGCUAUA--CAUGUCAAAUACAAAU
....(((((((((..(---(((.(....).(-------(((((....))))))..)))))))))))))....(((-...--......)))((((((((....--...))))))))..... ( -30.20)
>DroYak_CAF1 18245 93 - 1
ACUGCCAAGGAAUAAU---CGACCGCAAGCA-------CUCGA----------------GUUCCUUGGCAACAGC-ACAAUAAGCCAGCUUAUUUGGCCAUACACAUGCCAUAUACAAAU
..(((((((((((..(---(((.(....)..-------.))))----------------))))))))))).....-..((((((....))))))((((.........))))......... ( -28.40)
>DroPer_CAF1 15527 96 - 1
ACUUCUAUGGAAAGAUAAUGGA-UACAGGGAUUAGGUUUAGGA----------------UUUCCUCUGCAACACG-AGU--AA--UAGUGUCGUAGACUAUG--UGAACCACGUACAAAU
...(((((.........)))))-...........((((((((.----------------...))(((((.((((.-...--..--..)))).))))).....--)))))).......... ( -19.70)
>consensus
ACUUCCAAGGAAAAAU___CGACCGCAAGCA_______CACGA________________AUUCCUUGGCAACAGC_ACACAAAGCCAGCUUAUUUGGCUACACAUAUGCCAUAUACAAAU
....((((((((................................................))))))))..............((((((.....))))))..................... ( -9.35 = -10.13 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:42 2006