Locus 5716

Sequence ID 2R_DroMel_CAF1
Location 18,104,872 – 18,104,980
Length 108
Max. P 0.933735
window9154

overview

Window 4

Location 18,104,872 – 18,104,980
Length 108
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 78.44
Mean single sequence MFE -27.05
Consensus MFE -15.54
Energy contribution -15.35
Covariance contribution -0.19
Combinations/Pair 1.23
Mean z-score -2.33
Structure conservation index 0.57
SVM decision value 1.23
SVM RNA-class probability 0.933735
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18104872 108 - 20766785
ACAAAUGAUUUCGGUAAUCAGAUCGACACGGAUCUGGGUACAUAAAUCGCGACACUUACUGAGCGAUUUUUU---AUGAAAU-CAUGCUUUAUUACGACGUGUGAUUU-ACUA
....((((((((((((..((((((......))))))..)))..(((((((............)))))))...---.))))))-))).....(((((.....)))))..-.... ( -27.70)
>DroSec_CAF1 56205 108 - 1
ACAAAUGAUUUCGGUAAUCAGAUCGACACGGAUCUGGGUACAUAAAUCGCGACAAUUACUGGGCGAUUUUUU---AUGAAAU-CAUGGUGUAUUACGAUGGGUGAUUU-ACUA
....((((((((((((..((((((......))))))..)))..(((((((..((.....)).)))))))...---.))))))-)))((((.(((((.....))))).)-))). ( -33.10)
>DroSim_CAF1 57312 108 - 1
ACAAAUGAUUUCGGUAAUCAGAUCGACACGGAUCUGGGUACAUAAAUCGCGACAAUUACUGAGCGAUUUUUU---AUGAAAU-CAUGGUGUAUUACGACGGGUGAUUU-ACUA
....((((((((((((..((((((......))))))..)))..(((((((..((.....)).)))))))...---.))))))-)))((((.(((((.....))))).)-))). ( -32.70)
>DroEre_CAF1 54980 97 - 1
ACAAGUGAUUUCGGUAAUCAGAUCGACACGGAUCUGGGUACAUAAAGCGUGACAAUUACUGAGCGAAUUUGU---ACGAAAU-CAUGCUAAA-----------GAUUU-ACUA
....((((((((.....(((((((......)))))))(((((.....(((..((.....)).)))....)))---)))))))-)))......-----------.....-.... ( -25.30)
>DroYak_CAF1 56853 100 - 1
ACAAAUGAUUUCGGUAAUCAGAUCGACACGGAUCUGGGUACUUAAAGCAUGACAAUUACCGAGCGAAUUUUUUG-AAGAAAU-CAUGCCAAU-----------UAUUUGACUA
.(((((((((..((((..((((((......))))))..))))....((((((.......((((.......))))-......)-))))).)))-----------)))))).... ( -23.82)
>DroAna_CAF1 54563 110 - 1
ACAAGUGAUUUCGGUAAUCAGAUCGACACGAAUCUGAAAACAUAAAUUACGUCCCUUACUUGGCACUUUUUUUAUUCGAAAUUCAUUCAU--CCAAGAUGUGAUAUUU-GAUG
....(((((((..((..((((((((...)).))))))..))..)))))))((.((......)).)).........(((((..((((((..--....)).))))..)))-)).. ( -19.70)
>consensus
ACAAAUGAUUUCGGUAAUCAGAUCGACACGGAUCUGGGUACAUAAAUCGCGACAAUUACUGAGCGAUUUUUU___AUGAAAU_CAUGCUAUAUUACGA_G_GUGAUUU_ACUA
....((((((((((((.(((((((......))))))).)))......(((............)))...........)))))).)))........................... (-15.54 = -15.35 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:33 2006