Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 18,103,315 – 18,103,432 |
Length | 117 |
Max. P | 0.609640 |
Location | 18,103,315 – 18,103,432 |
---|---|
Length | 117 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.76 |
Mean single sequence MFE | -26.40 |
Consensus MFE | -22.51 |
Energy contribution | -22.97 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.16 |
Mean z-score | -0.95 |
Structure conservation index | 0.85 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.609640 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18103315 117 - 20766785 AUCGAAAUGUUAAAUGCUGGUUUAACGCAUGUUGGCUAGGAUUCAAGGAACUACUAGGACGCGGUAACUCCUGGU---UUGGUCAUUAAAUGAUACAAAAUUAUACUUUACAAGUAACUU ........(((((((....))))))).(((..((((((((.....((((..((((.......))))..))))..)---)))))))....)))...........((((.....)))).... ( -19.50) >DroSec_CAF1 54638 99 - 1 AUCAAAAUGUUAGUUGCUGGCUCAACGCAUGUUGGCUAGGAUUCAAGGAACUACUAGGACGCGGGGACUCCUGGUGGUAGAGUCAUUAAAUUAU---------------------AACUU ...........((((((((((.((((....)))))))))(((((.....((((((((((...(....))))))))))).))))).........)---------------------)))). ( -30.30) >DroSim_CAF1 55823 99 - 1 AUCAAAAUGUUAGUUGCUGGCUCAACGCAUGUUGGCUAGGAUUCAAGGAACUACUGGGACGCGGGGACUCCUGGUGGUAGAGUCAUUAAAUGAU---------------------AACUU ((((............(((((.((((....)))))))))(((((.....(((((..(((...(....))))..))))).)))))......))))---------------------..... ( -29.40) >consensus AUCAAAAUGUUAGUUGCUGGCUCAACGCAUGUUGGCUAGGAUUCAAGGAACUACUAGGACGCGGGGACUCCUGGUGGUAGAGUCAUUAAAUGAU_____________________AACUU ................(((((.((((....)))))))))(((((.....((((((((((...(....))))))))))).))))).................................... (-22.51 = -22.97 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:32 2006