| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,103,120 – 18,103,235 |
| Length | 115 |
| Max. P | 0.806287 |
| Location | 18,103,120 – 18,103,235 |
|---|---|
| Length | 115 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 89.30 |
| Mean single sequence MFE | -32.77 |
| Consensus MFE | -24.20 |
| Energy contribution | -24.76 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.90 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.806287 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18103120 115 - 20766785 UCGAAAUUCGAUCUGCAAAAUAACA-----AUGGAUUUUUACCCUUUGCCCAAUGGCAAGCAGAUGGAUACCACAUGCUUAACUUGCUUGUCAAGUAAGUCAAGUUGCAUCGGUAUGCAG (((.....)))(((((.........-----..((........)).(((((....))))))))))((.(((((..((((..((((((((((.....)))).)))))))))).))))).)). ( -33.40) >DroSec_CAF1 54443 115 - 1 UCGAAGACAGAUCUGCAAAAUAACA-----AUAGAUUUUUACCCUUUGCCCAAUGGCAAUCAGCUGUAUACCACAUGCUUUACUUGCUUGUCAAGUAAGUCAAGUUGCAUCGGUAUGCAG ..((....(((((((..........-----.))))))).......(((((....)))))))..(((((((((..((((...(((((((((.....)))).))))).)))).))))))))) ( -30.60) >DroSim_CAF1 55623 120 - 1 UCAAAGACAGAUCUGCAAAAUAAUAGAUUUAUAGAUUUUUACCCUUGGCCCAAUGGCAAUCAGCUGUAUACCACAUGCUUUACUUGCUUGUCAAGUAAGUGAAGCUGCAUCGGUAUGCAG ........(((((((........))))))).................(((....)))......(((((((((....((((((((((((.....))))))))))))......))))))))) ( -34.30) >consensus UCGAAGACAGAUCUGCAAAAUAACA_____AUAGAUUUUUACCCUUUGCCCAAUGGCAAUCAGCUGUAUACCACAUGCUUUACUUGCUUGUCAAGUAAGUCAAGUUGCAUCGGUAUGCAG .........((((((................))))))........(((((....)))))....(((((((((....((((.(((((((.....))))))).))))......))))))))) (-24.20 = -24.76 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:31 2006