Locus 5712

Sequence ID 2R_DroMel_CAF1
Location 18,097,056 – 18,097,147
Length 91
Max. P 0.810144
window9149

overview

Window 9

Location 18,097,056 – 18,097,147
Length 91
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 87.10
Mean single sequence MFE -32.64
Consensus MFE -23.48
Energy contribution -24.08
Covariance contribution 0.60
Combinations/Pair 1.15
Mean z-score -2.12
Structure conservation index 0.72
SVM decision value 0.65
SVM RNA-class probability 0.810144
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18097056 91 - 20766785
GGCGGAACCUUGAGUGAUAGUGCUA----UUUUGAGGACUAUGAC------AAGGUCCGAGUCUUUCAGCGGGUCUUAAUCGCGGCUUAGUGAUAAGCCAG
..((((.((((..((.(((((.((.----.....)).))))).))------)))))))).........((((.......))))((((((....)))))).. ( -32.60)
>DroSec_CAF1 48330 95 - 1
GGCGGAACCUUGAGUGAUAGUGCUA----UUUCGAGGGCUAUGACAACGACAAGGUCCAAGU--UUCAGCGGUUCUUAAUCGCGGUUUAGUGAUAAGCCUG
...(((.(((((.((.(((((.((.----.....)).))))).)).....))))))))....--....(((((.....)))))((((((....)))))).. ( -30.80)
>DroSim_CAF1 49062 95 - 1
GGCGGAACCUUGAGUGAUAGUGCUA----UUUCGAGGGCUAUGACAACGACAAGGUCCAAGU--UUCAGCGGCUCUUAAUCGCGGCUUAGUGAUAAGCAUG
...(((.(((((.((.(((((.((.----.....)).))))).)).....))))))))....--....((((.......)))).(((((....)))))... ( -28.20)
>DroEre_CAF1 48805 95 - 1
GGCGGAACCUUGAGUGAUAGUGCUA----UUUCGAGGGCUAUGACAAUGACAAGGUCUGAGU--UUCAGCGGAUCUUAAUCGCGGCUUAGUGAUAAGCCUG
.((((........((.(((((.((.----.....)).))))).))......((((((((...--.....))))))))..))))((((((....)))))).. ( -32.30)
>DroYak_CAF1 50274 100 - 1
GGCCGAACCUUGAGUGAUAGUGGUAGUCACUUCGAGGGCCAUGGCAAUGACAAGGGCCGAAUU-UUUAGCGGUUCUUAAUCGCGGCUUAGUGAUAAGCCUG
((((...(((((((((((.......))))).))))))((....)).........)))).....-....(((((.....)))))((((((....)))))).. ( -39.30)
>consensus
GGCGGAACCUUGAGUGAUAGUGCUA____UUUCGAGGGCUAUGACAACGACAAGGUCCGAGU__UUCAGCGGUUCUUAAUCGCGGCUUAGUGAUAAGCCUG
...(((.(((((.((.(((((.((..........)).))))).)).....))))))))..........((((.......))))((((((....)))))).. (-23.48 = -24.08 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:28 2006