Locus 571

Sequence ID 2R_DroMel_CAF1
Location 2,954,150 – 2,954,270
Length 120
Max. P 0.728526
window1045

overview

Window 5

Location 2,954,150 – 2,954,270
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 78.11
Mean single sequence MFE -38.98
Consensus MFE -25.08
Energy contribution -24.67
Covariance contribution -0.41
Combinations/Pair 1.39
Mean z-score -1.49
Structure conservation index 0.64
SVM decision value 0.42
SVM RNA-class probability 0.728526
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2954150 120 - 20766785
GUGAGCCAUUGGGUGUGUUGAAGACCUGAGCCAGUUGGGUGGCGGGCAGAUCGAGGAUACAGUUGACCAGAAAGAUUGGCUUGUUGAACUGCAGCAGGUGUUGAGUAAUAAGCGAACCGU
....(((.(..(((.(.....).)))..)((((......)))).))).......((...(((((.........)))))(((((((..(((.((((....))))))))))))))...)).. ( -32.70)
>DroVir_CAF1 1512 120 - 1
GCGAGCCAUUGGGCGUGUUAAAGAUUUGCGCCAGCUGCACAGCAGGCAGCUCCAGAAUGCAGUUGACUAGGAAGAUGGGCUUAUUAAACUGAAGCACAUGUUGCACUAUAAGUGAUCCAU
(((((((....)))(((((..((......(((.(((....))).)))(((.(((...(.(((....)).).)...)))))).......))..)))))...))))................ ( -29.30)
>DroPse_CAF1 3589 120 - 1
GGGAGCCGUUGGGCGUGUUAAAGAUCUGGGCUAGUUGAGCGGCUGGCAGAUCGAGGAUGCAGUUGACCAGGAAAAUGGGUUUGUUGAACUGCAGUACAUGCUGAGCAAUCAGCGAGCCAU
((..(((....)))(((((...(((((..(((((((....))))))))))))...)))))......)).........((((((((((....((((....)))).....)))))))))).. ( -42.60)
>DroGri_CAF1 1572 120 - 1
GCGAGCCAUUUGGUGUGUUAAAGAUCUGUGCCAGCUGCACAGCGGGCAAAUCCAGAAUGCAAUUGACCAAAUAGAUGGGCUUGUUGAAUUGGAGCAGAUGCUGGACCAUCAGCGAGCCAU
.......((((((((((((...(((...((((.(((....))).)))).)))...))))).....))))))).....((((((((((..((((((....)))...))))))))))))).. ( -39.80)
>DroMoj_CAF1 1331 120 - 1
GGGAGCCAUUUGGCGUGUUGAACACUUGCGCCAGCUGCGCAGCCGGCAAUUCCAGAAUGCUGUUGACCAGGAAAAUGGGCUUGUUGAAUUUCAGCAAAUGCUGAGCUAUCAGCGAGCCAU
(((((((....((((((.....))).(((((.....)))))))))))..))))....(.(((.....))).).....((((((((((..((((((....))))))...)))))))))).. ( -45.80)
>DroAna_CAF1 1555 120 - 1
GGGAGCCGUUGGGGGUGUUGAAAACCUGGGCCAGCUGAGAGGCUGGCAGAUCUAGAAUGCAAUUCACCAGGAAGAUGGGUUUGUUGAAUUGUAGAAGGUGUUGGGCUAUCAGGGAGCCGU
.((..((.((((....(((.((.((((..(((((((....)))))))...((((.(((.((((...(((......)))....)))).))).)))))))).)).)))..))))))..)).. ( -43.70)
>consensus
GGGAGCCAUUGGGCGUGUUAAAGACCUGCGCCAGCUGCGCAGCGGGCAGAUCCAGAAUGCAGUUGACCAGGAAGAUGGGCUUGUUGAACUGCAGCAGAUGCUGAGCUAUCAGCGAGCCAU
....(((....)))(((((..........(((.(((....))).)))........))))).................((((((((((....((((....)))).....)))))))))).. (-25.08 = -24.67 +  -0.41) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:53 2006