Locus 5705

Sequence ID 2R_DroMel_CAF1
Location 18,064,201 – 18,064,302
Length 101
Max. P 0.670875
window9135

overview

Window 5

Location 18,064,201 – 18,064,302
Length 101
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 78.68
Mean single sequence MFE -45.70
Consensus MFE -33.22
Energy contribution -34.65
Covariance contribution 1.43
Combinations/Pair 1.44
Mean z-score -1.17
Structure conservation index 0.73
SVM decision value 0.29
SVM RNA-class probability 0.670875
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 18064201 101 + 20766785
GCUCCGGGUGAGGGCAUCAGCUCCACGGGCGGAUAGGAGUGCCUGGUCGCUUGGGGUGUUCCAGGCGCCGAGGCCGGUGAGGUCGGGUUCGGCGUGGUUGC
(((((((((((((((....)).)).((((((........)))))).)))))))))))((..(..((((((((.((((.....)))).)))))))).)..)) ( -48.80)
>DroVir_CAF1 28413 89 + 1
CCAACCGGCGACGGCAUCAGCUCCGAAG-C------GGCCACGUGCUGAUUG----UGCCCCUGCGGCAGUGUUUGUAGUUGU-GGUUGUGGUAUUGCUGU
....(((....)))...((((......(-(------((((((((((.(((..----((((.....))))..))).)))..)))-))))))......)))). ( -30.70)
>DroSec_CAF1 21821 101 + 1
GCUCCGGGUGAGGGCAUCAGCUCCACGGGCGGAUAGGACUGCCUGGUCGCUUGGAGUGUUCCAGGCGCCGAGGCCGGAGAGGUCGGGUUCGGCGUGGUUGC
(((((((((((((((....)).)).(((((((......))))))).)))))))))))((..(..((((((((.((((.....)))).)))))))).)..)) ( -52.70)
>DroSim_CAF1 21888 101 + 1
GCUCCGGGUGAGGGCAUCAGCUCCACGGGCGGAUAGGACUGCCUGGUCGCUUGGAGUGUUCCAGGCGCCGAGGCCGGAGAGGUCGGGUUCGGCGUGGUUGC
(((((((((((((((....)).)).(((((((......))))))).)))))))))))((..(..((((((((.((((.....)))).)))))))).)..)) ( -52.70)
>DroEre_CAF1 22065 101 + 1
GCUCCGGGUGAGGGCAUCAGCUCCAUGGGCGGAUAGGGCUGCUUCGUGGCCUGGAGUGUUCCAGGCGCCGAGGCCGGAGAGGUCGGGUUGGGCGUGGUUGC
(((((((((..((((....))))(((((((((......)))).))))))))))))))((..(..(((((.((.((((.....)))).)).))))).)..)) ( -45.80)
>DroYak_CAF1 22515 101 + 1
GCUCCGGGCGAGGGCAUCAGCUCCAUGGGCGGAUAGGGCUGCUUGGUGGCUUGGAGUGUACCAGGCGCCGAGGCCGGAGAGCUUGGAUUCGGCGUGGUUGC
(((((((((..((((....))))(((.(((((......)))).).))))))))))))..(((..((((((((.((((.....)))).)))))))))))... ( -43.50)
>consensus
GCUCCGGGUGAGGGCAUCAGCUCCACGGGCGGAUAGGACUGCCUGGUCGCUUGGAGUGUUCCAGGCGCCGAGGCCGGAGAGGUCGGGUUCGGCGUGGUUGC
(((((((((..((((....))))..(((((((......)))))))...))))))))).......((((((((.((((.....)))).))))))))...... (-33.22 = -34.65 +   1.43)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:16 2006