| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 18,063,253 – 18,063,360 |
| Length | 107 |
| Max. P | 0.842363 |
| Location | 18,063,253 – 18,063,360 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 78.63 |
| Mean single sequence MFE | -40.48 |
| Consensus MFE | -23.43 |
| Energy contribution | -22.80 |
| Covariance contribution | -0.63 |
| Combinations/Pair | 1.36 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.842363 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 18063253 107 - 20766785 CAGUACCAACAGUUGCAGCAGCAGACGGCUGCCUAUCAUCUGCUGCAGCAACAGGUAAAUGCUGGC--GGCGGAGCAACGGAGUCGGCUCACUACAAGGGCAAUCCCUA ...........(((((.(((((.....)))))......((((((((((((.........)))).))--)))))))))))(((....((((.......))))..)))... ( -40.10) >DroVir_CAF1 27495 101 - 1 CAGUACCAACAGCUGCAGCAGCAAACGGCCGCCUAUCACAUGCUGCAGCA---AGUGGCCGCAGUCUCGGGUGAGCCU-----CAGUCCCACUAUAAGGGGAAUCCAUA ...........(((((((((......((...)).......))))))))).---.(.((((((........))).))).-----)..((((........))))....... ( -30.72) >DroGri_CAF1 26482 101 - 1 CAAUACCAGCAGUUGCAGCAGCAGACGGCCGCCUACCACAUGUUGCAACA---GGUGGCCGCUGUUUCGGGCGAGUCA-----CAAGCCCACUACAAGGGUAAUCCAUA ...((((.((....)).(.(((((.(((((((((...............)---))))))))))))).)((((......-----...))))........))))....... ( -36.16) >DroEre_CAF1 21120 107 - 1 CAGUACCAGCAGUUGCAGCAGCAGACGGCGGCCUAUCACCUGCUGCAGCAGCAGGUGAACGCUGCC--GGCGGAGCAGCGGAUGCGGUCCACUACAAGGGCAAUCCCUA ..((.((.((..((((....)))).(((((((...((((((((((...))))))))))..))))))--))))).))((.((((...((((.......)))).)))))). ( -49.70) >DroYak_CAF1 21531 107 - 1 CAGUACCAGCAGCUGCAGCAGCAGACGGCUGCCUAUCACUUGCUGCAGCAGCAGGUGAACGCUGCC--GGCGGAGCAGUGGAGUCGGCCCACUACAAGGGCAAUCCCUA ..((.((.((..((((....)))).((((.((...((((((((((...))))))))))..)).)))--))))).))((.(((....((((.......))))..))))). ( -46.70) >DroMoj_CAF1 32816 101 - 1 CAGUACCAGCAGCUGCAGCAGCAGACGGCCGCCUAUCACAUGCUGCAGCA---GGUGGCCGCCGUCUCGGGCGAGCCG-----CAGGCCCAUUACAAAGGCAAUCCGUA ...........(((((((((...((..(....)..))...))))))))).---.(((((((((......)))).))))-----)..(((.........)))........ ( -39.50) >consensus CAGUACCAGCAGCUGCAGCAGCAGACGGCCGCCUAUCACAUGCUGCAGCA___GGUGAACGCUGUC__GGCGGAGCAG_____CAGGCCCACUACAAGGGCAAUCCCUA .....((....(((((((((...((.((....)).))...)))))))))....(((....))).....))................((((.......))))........ (-23.43 = -22.80 + -0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:15 2006